Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NLW79_RS18935 Genome accession   NZ_CP100651
Coordinates   3658977..3660374 (-) Length   465 a.a.
NCBI ID   WP_106021953.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B334     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3653977..3665374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLW79_RS18900 (NLW79_18900) flgL 3654165..3655061 (-) 897 WP_106019635.1 flagellar hook-associated protein FlgL -
  NLW79_RS18905 (NLW79_18905) flgK 3655071..3656594 (-) 1524 WP_095712911.1 flagellar hook-associated protein FlgK -
  NLW79_RS18910 (NLW79_18910) flgN 3656613..3657095 (-) 483 WP_254517898.1 flagellar protein FlgN -
  NLW79_RS18915 (NLW79_18915) flgM 3657110..3657376 (-) 267 WP_024123025.1 flagellar biosynthesis anti-sigma factor FlgM -
  NLW79_RS18920 (NLW79_18920) - 3657456..3657875 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  NLW79_RS18925 (NLW79_18925) comFC 3657949..3658671 (-) 723 WP_142396176.1 double zinc ribbon domain-containing protein Machinery gene
  NLW79_RS18930 (NLW79_18930) - 3658635..3658931 (-) 297 WP_024123028.1 competence protein ComFB -
  NLW79_RS18935 (NLW79_18935) comFA 3658977..3660374 (-) 1398 WP_106021953.1 ATP-dependent helicase ComFA Machinery gene
  NLW79_RS18940 (NLW79_18940) - 3660481..3661326 (-) 846 WP_106019639.1 DegV family protein -
  NLW79_RS18945 (NLW79_18945) degU 3661423..3662112 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NLW79_RS18950 (NLW79_18950) degS 3662195..3663352 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  NLW79_RS18955 (NLW79_18955) - 3663569..3664222 (+) 654 WP_044159478.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 52911.04 Da        Isoelectric Point: 9.7879

>NTDB_id=706037 NLW79_RS18935 WP_106021953.1 3658977..3660374(-) (comFA) [Bacillus halotolerans strain MEC_B334]
MQTKTSESNSPFSKELQQQLQGRHLLKTEIPFSDEIIDWHIEHGYISAEESISKNKWGYRCNRCGQNDQQYFSSYHSSGE
DKVYCRSCVMMGRVSEDISLYSWCKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQEELLIWAVCGAGKTELLFPG
IESALNLRLRVCIATPRTDVVLELAPRLKAAFQGADISVLYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLTRNKIPNAVK
RWIEQHVKEGKPVFLFVPSISVLVKAASCFKNMNYRTAAVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNRLVNI

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=706037 NLW79_RS18935 WP_106021953.1 3658977..3660374(-) (comFA) [Bacillus halotolerans strain MEC_B334]
ATGCAGACTAAGACATCAGAATCGAACAGCCCATTCTCTAAAGAACTGCAGCAGCAGCTTCAGGGCCGTCATCTGCTTAA
AACAGAAATCCCATTTTCTGACGAGATCATTGATTGGCATATCGAGCATGGTTATATATCTGCCGAGGAGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCTTCGTATCATTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGTGAGTGAGGATATTTCTTTATATTCCTGGTGCAAGGAGGC
AGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATCGGCATTAAATCTAAGACTGCGTGTTTGTATTGCGACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
ACTGAAGGCTGCATTTCAGGGTGCTGATATTTCAGTTCTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGTTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTATCTAAGCGCAAC
ACCTCCTAAAGAATTAAAAAGAAAAACGTATAAAGGTGAGTTAAAATCCGTTCGCATACCGGCCAGATACCATCGGAAGC
CATTGCCTGAACCGCGCTTTCAGTGGTGCGGAAACTGGAAAAAGAAATTAACCCGAAACAAAATCCCAAATGCGGTAAAA
AGATGGATAGAACAGCATGTGAAAGAAGGAAAGCCCGTTTTTTTATTTGTTCCTTCCATTTCTGTTCTGGTAAAAGCTGC
TTCCTGTTTTAAAAACATGAATTATCGAACAGCGGCTGTACATGCGGAAGATAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTGGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCGATGTTATTTATTTTCACTTCGGAAAAACAAAGAGTATGATTGAGGCAAGAAAACATATAAAAATAATGA
ATGAATTGGCTTTAAAAAATAGACTAGTTAATATTTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(121-269)

Helicase conserved C-terminal domain (Helicase_C)

(323-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.768

97.419

0.826