Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NLW79_RS16960 Genome accession   NZ_CP100651
Coordinates   3266897..3267541 (-) Length   214 a.a.
NCBI ID   WP_024122680.1    Uniprot ID   A0A9Q6AB41
Organism   Bacillus halotolerans strain MEC_B334     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3261897..3272541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLW79_RS16925 (NLW79_16925) - 3263090..3263521 (+) 432 WP_024122673.1 Na(+)/H(+) antiporter subunit B -
  NLW79_RS16930 (NLW79_16930) - 3263521..3263862 (+) 342 WP_044158938.1 Na(+)/H(+) antiporter subunit C -
  NLW79_RS16935 (NLW79_16935) - 3263855..3265336 (+) 1482 WP_254517858.1 Na+/H+ antiporter subunit D -
  NLW79_RS16940 (NLW79_16940) - 3265342..3265818 (+) 477 WP_044158941.1 Na+/H+ antiporter subunit E -
  NLW79_RS16945 (NLW79_16945) - 3265818..3266102 (+) 285 WP_106019477.1 Na(+)/H(+) antiporter subunit F1 -
  NLW79_RS16950 (NLW79_16950) mnhG 3266086..3266460 (+) 375 WP_024122678.1 monovalent cation/H(+) antiporter subunit G -
  NLW79_RS16955 (NLW79_16955) - 3266499..3266879 (-) 381 WP_044158943.1 hotdog fold thioesterase -
  NLW79_RS16960 (NLW79_16960) comA 3266897..3267541 (-) 645 WP_024122680.1 two-component system response regulator ComA Regulator
  NLW79_RS16965 (NLW79_16965) comP 3267622..3269928 (-) 2307 WP_254517859.1 histidine kinase Regulator
  NLW79_RS16970 (NLW79_16970) comX 3269944..3270165 (-) 222 WP_059292642.1 competence pheromone ComX -
  NLW79_RS16975 (NLW79_16975) - 3270162..3271031 (-) 870 WP_101864136.1 polyprenyl synthetase family protein -
  NLW79_RS16980 (NLW79_16980) degQ 3271216..3271356 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  NLW79_RS16985 (NLW79_16985) - 3271817..3272185 (+) 369 WP_106019478.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24109.42 Da        Isoelectric Point: 4.6730

>NTDB_id=706031 NLW79_RS16960 WP_024122680.1 3266897..3267541(-) (comA) [Bacillus halotolerans strain MEC_B334]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGDILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=706031 NLW79_RS16960 WP_024122680.1 3266897..3267541(-) (comA) [Bacillus halotolerans strain MEC_B334]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGACATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATCGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCAGGACGGAAGCGGTGTTGATTGCAAAATCGGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

98.598

100

0.986