Detailed information NTG0705833

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: NLY38_RS17090
• Genome accession: NZ_CP100553
• Coordinates: 3658287..3660500 (-)
• Length: 737 a.a.
• NCBI ID: WP_195881813.1
• Uniprot ID: -
• Organism: Pseudomonas hydrolytica strain KHPS2
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3653287..3665500

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NLY38_RS17055 (NLY38_17055)	murB	3653702..3654721 (-)	1020	WP_195881631.1	UDP-N-acetylmuramate dehydrogenase	-
NLY38_RS17060 (NLY38_17060)	-	3654718..3655182 (-)	465	WP_195881630.1	low molecular weight protein-tyrosine-phosphatase	-
NLY38_RS17065 (NLY38_17065)	kdsB	3655182..3655946 (-)	765	WP_195881629.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
NLY38_RS17070 (NLY38_17070)	-	3655947..3656132 (-)	186	WP_003245207.1	Trm112 family protein	-
NLY38_RS17075 (NLY38_17075)	lpxK	3656155..3657156 (-)	1002	WP_195881628.1	tetraacyldisaccharide 4'-kinase	-
NLY38_RS17080 (NLY38_17080)	-	3657157..3657585 (-)	429	WP_003245210.1	biopolymer transporter ExbD	-
NLY38_RS17085 (NLY38_17085)	exbB	3657582..3658214 (-)	633	WP_003245211.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
NLY38_RS17090 (NLY38_17090)	comA	3658287..3660500 (-)	2214	WP_195881813.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
NLY38_RS17095 (NLY38_17095)	-	3660640..3661167 (+)	528	WP_129481445.1	DUF2062 domain-containing protein	-
NLY38_RS17100 (NLY38_17100)	-	3661204..3662448 (-)	1245	WP_129481446.1	lipoprotein-releasing ABC transporter permease subunit	-
NLY38_RS17105 (NLY38_17105)	lolD	3662448..3663149 (-)	702	WP_230089884.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
NLY38_RS17110 (NLY38_17110)	-	3663154..3664401 (-)	1248	WP_003245219.1	lipoprotein-releasing ABC transporter permease subunit	-
NLY38_RS17115 (NLY38_17115)	-	3664495..3665061 (+)	567	WP_003245221.1	PilZ domain-containing protein	-
NLY38_RS17120 (NLY38_17120)	-	3665081..3665389 (+)	309	WP_003245222.1	hypothetical protein	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 79654.47 Da
• Isoelectric Point: 10.0613

>NTDB_id=705833 NLY38_RS17090 WP_195881813.1 3658287..3660500(-) (comA) [Pseudomonas hydrolytica strain KHPS2]
MLALALGLLTLRFLPGLPAGWMLAVAAILGLSLLFSRLYPVGLFLLGLAWACCSAQWALDDRLGEELDGRTLWLEGRVVG
LPEVSAGVVRFQLEEAHSRRAELPGRLRLAWYGGPEVRGGERWRLAVNLKRPHGLVNPQSFDYEAWLLARRIGATGTIKA
GERLAPASGLGSWRDGLRQRLLAAPAFGREGGLAALVLGDGSGLSTADWRLLQHTGTVHLMVISGQHIALLAGFLYGLVA
LLAKLGAWPRGWPWLPVACALALAGALAYGMLAGFEVPVRRACVMVALVLLWRLRFRHLGAWWPLLLALLVVLLLEPLAS
LQPGFWLSFSAVAVLILVFGGRLGVWGWWRGLTRAQWTMAIGLLPMMLILGLPVSSSGPLANLLAVPWVGFVTVPLALLG
TLLLPVPGVGEGLLWLAGGSLHVLFELLGRIADWLPAWLPSRLPLWAWLLALAGALLLLLPAGIALRLPGVALLLPALFL
PSTAPQEGHAEVWLLDVGQGLSVLVRTREHALLYDAGPRFGDFDSGERIVLPSLRALNLPRLDMLLLSHADNDHAGGAAA
ILAGMPVARVVSGEPQRLAHRVQSEPCDSGQSWQWNGVDLRTWQWERAVSGNQASCVLLVEAGGERLLLTGDIDARAEQA
LLQTDFPLAARWLLAPHHGSRSSSSQRFIEAVAPEHVLIARGRHNNFAHPHPQVLQRYQAAGVQVHDSSATGALRVLLGA
QGQAQGLRSQARFWREK

Nucleotide

• Length: 2214 bp

>NTDB_id=705833 NLY38_RS17090 WP_195881813.1 3658287..3660500(-) (comA) [Pseudomonas hydrolytica strain KHPS2]
ATGTTGGCGCTGGCCTTGGGCCTATTGACGCTGCGCTTTCTACCCGGCTTGCCGGCGGGCTGGATGCTGGCCGTGGCGGC
CATTCTCGGCCTGTCGCTGCTGTTCTCGCGGCTGTACCCCGTCGGTCTGTTTCTGCTCGGCCTGGCCTGGGCCTGCTGCT
CCGCGCAATGGGCGCTGGATGACCGTCTTGGCGAAGAGCTGGACGGCCGCACCCTGTGGCTGGAAGGGCGCGTTGTCGGC
TTGCCGGAGGTCTCCGCAGGGGTGGTGCGTTTCCAGCTGGAGGAGGCCCATTCGCGTCGCGCCGAGCTGCCTGGGCGGCT
GCGTCTGGCCTGGTATGGCGGACCGGAAGTGCGCGGCGGCGAGCGCTGGCGTCTGGCAGTCAATCTCAAGCGTCCGCACG
GGCTGGTCAATCCACAGAGCTTCGACTACGAGGCCTGGTTGCTGGCGCGGCGAATCGGCGCCACCGGTACCATCAAGGCC
GGTGAACGCTTGGCGCCCGCCAGTGGCCTGGGCAGTTGGCGCGACGGCCTGCGCCAACGGCTGCTGGCGGCACCTGCCTT
CGGCCGCGAGGGTGGGCTGGCGGCGCTCGTGCTGGGCGACGGCTCCGGCTTGAGCACGGCCGACTGGCGCCTGCTGCAGC
ACACCGGCACGGTGCATCTGATGGTCATCTCCGGTCAGCATATCGCCCTGCTGGCGGGCTTTCTCTATGGTCTGGTGGCC
CTGCTGGCGAAGCTGGGGGCCTGGCCGCGGGGCTGGCCCTGGTTGCCTGTCGCCTGCGCCCTGGCACTTGCTGGCGCGCT
GGCCTACGGCATGCTGGCCGGCTTCGAGGTGCCGGTACGCCGGGCCTGCGTGATGGTCGCGCTGGTGCTGCTCTGGCGCC
TGCGCTTTCGTCATCTTGGCGCCTGGTGGCCACTGTTGCTGGCCTTGCTGGTCGTCCTGCTGCTGGAGCCATTGGCTTCG
CTACAGCCCGGCTTCTGGCTGTCGTTCTCGGCGGTGGCGGTGCTGATCCTGGTGTTCGGCGGTCGGCTCGGCGTGTGGGG
CTGGTGGCGCGGTCTGACGCGTGCGCAATGGACCATGGCCATCGGTCTGCTGCCGATGATGCTGATCCTCGGCTTGCCGG
TGAGCAGCAGCGGGCCGCTGGCCAATCTGCTTGCCGTGCCCTGGGTGGGCTTCGTGACGGTGCCCCTGGCCTTGCTCGGT
ACCCTGCTGTTGCCCGTGCCGGGTGTGGGCGAGGGCCTGCTGTGGTTGGCGGGTGGCTCGCTGCATGTGCTGTTCGAATT
GCTCGGGCGCATCGCCGATTGGCTGCCGGCCTGGTTGCCCAGCCGTCTGCCGCTGTGGGCTTGGCTGCTGGCCTTGGCTG
GCGCGTTGCTGCTGCTCCTGCCCGCCGGTATCGCATTGCGTTTGCCGGGTGTGGCGCTGCTGCTGCCGGCCCTGTTTCTC
CCGTCGACGGCGCCGCAGGAGGGGCACGCCGAGGTCTGGCTGCTGGACGTGGGGCAGGGCCTGTCGGTGCTGGTGCGTAC
CCGCGAGCACGCCCTGCTGTACGATGCCGGCCCGCGTTTCGGCGACTTCGACAGCGGCGAGCGCATCGTTCTACCGTCGC
TCCGGGCATTGAATCTGCCACGCCTCGACATGCTTCTGCTCAGTCACGCCGATAACGATCATGCCGGTGGCGCGGCCGCC
ATCCTCGCCGGCATGCCGGTCGCGCGAGTGGTCAGTGGCGAGCCGCAGCGCCTGGCGCATCGCGTGCAGTCGGAGCCTTG
CGACTCGGGCCAGAGCTGGCAGTGGAACGGCGTCGACCTCAGAACCTGGCAGTGGGAACGGGCCGTCTCGGGCAATCAGG
CCTCCTGTGTCTTACTGGTCGAGGCCGGGGGCGAGCGCCTGCTGCTGACCGGCGATATCGACGCGCGCGCCGAGCAGGCC
CTGCTGCAGACGGATTTTCCCCTGGCGGCGCGCTGGTTGCTGGCGCCGCACCATGGCAGTCGCAGCTCATCCAGCCAGCG
CTTCATCGAGGCGGTGGCGCCCGAGCATGTGCTGATCGCCCGTGGTCGCCATAACAATTTCGCTCATCCGCACCCCCAGG
TGCTCCAGCGTTATCAGGCCGCCGGTGTCCAGGTGCACGACAGTTCGGCGACCGGTGCCCTGCGTGTGCTACTGGGCGCC
CAGGGGCAGGCGCAGGGGTTGCGAAGCCAGGCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (196-461)

• Metallo-beta-lactamase superfamily (Lactamase_B) (496-678)

• Domain of unknown function (DUF4131) (DUF4131) (18-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	67.27	97.422	0.655
comA	Ralstonia pseudosolanacearum GMI1000	36.561	100	0.389