Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NLY38_RS17085 Genome accession   NZ_CP100553
Coordinates   3657582..3658214 (-) Length   210 a.a.
NCBI ID   WP_003245211.1    Uniprot ID   U1ZB92
Organism   Pseudomonas hydrolytica strain KHPS2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3652582..3663214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY38_RS17055 (NLY38_17055) murB 3653702..3654721 (-) 1020 WP_195881631.1 UDP-N-acetylmuramate dehydrogenase -
  NLY38_RS17060 (NLY38_17060) - 3654718..3655182 (-) 465 WP_195881630.1 low molecular weight protein-tyrosine-phosphatase -
  NLY38_RS17065 (NLY38_17065) kdsB 3655182..3655946 (-) 765 WP_195881629.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NLY38_RS17070 (NLY38_17070) - 3655947..3656132 (-) 186 WP_003245207.1 Trm112 family protein -
  NLY38_RS17075 (NLY38_17075) lpxK 3656155..3657156 (-) 1002 WP_195881628.1 tetraacyldisaccharide 4'-kinase -
  NLY38_RS17080 (NLY38_17080) - 3657157..3657585 (-) 429 WP_003245210.1 biopolymer transporter ExbD -
  NLY38_RS17085 (NLY38_17085) exbB 3657582..3658214 (-) 633 WP_003245211.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NLY38_RS17090 (NLY38_17090) comA 3658287..3660500 (-) 2214 WP_195881813.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NLY38_RS17095 (NLY38_17095) - 3660640..3661167 (+) 528 WP_129481445.1 DUF2062 domain-containing protein -
  NLY38_RS17100 (NLY38_17100) - 3661204..3662448 (-) 1245 WP_129481446.1 lipoprotein-releasing ABC transporter permease subunit -
  NLY38_RS17105 (NLY38_17105) lolD 3662448..3663149 (-) 702 WP_230089884.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22891.18 Da        Isoelectric Point: 8.5156

>NTDB_id=705832 NLY38_RS17085 WP_003245211.1 3657582..3658214(-) (exbB) [Pseudomonas hydrolytica strain KHPS2]
MWELVKAGGWMMLPIILCSIAAAGIVAERLWTLRPARVTPANLLAQVWRWIKDKKLNNQKLKELREHSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAPMLAGGISKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEMVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=705832 NLY38_RS17085 WP_003245211.1 3657582..3658214(-) (exbB) [Pseudomonas hydrolytica strain KHPS2]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTCTGTTCCATCGCTGCTGCCGGCATCGTCGC
CGAGCGCCTGTGGACCCTGCGGCCCGCCCGCGTCACCCCGGCCAATCTGCTGGCCCAGGTGTGGCGCTGGATCAAGGACA
AGAAACTCAACAACCAGAAGCTCAAGGAGCTGCGCGAGCATTCGCCGCTGGGGCAGATTCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCGCGCGCGTCATCCATGAGCTGGAGCGCTACCT
CAATGCCCTGGGCACCATCGCCGGCATCGCCCCGTTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGAGATCTTCA
GCTCCTTCATGGGCTCGGGCATGGCCAACGCGCCAATGCTCGCCGGCGGTATCTCCAAGGCTCTGATCACCACCGCGGCC
GGTCTGATGGTGGCGATCCCGGCGCTGTTCTTCCATCGCTACCTGCAGCGCCGCGTCGACGAGCTGGTGGTGGGCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAATGGTCCAGGGTGATCGCGACGTCGACCTGGGCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U1ZB92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

89.048

100

0.89