Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FGCSD_RS02210 Genome accession   NZ_AP018726
Coordinates   416041..418011 (+) Length   656 a.a.
NCBI ID   WP_129555301.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 411041..423011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS02190 (FGCSD_0376) sufU 411089..411565 (+) 477 WP_129555298.1 Fe-S cluster assembly sulfur transfer protein SufU -
  FGCSD_RS02195 (FGCSD_0377) sufB 411558..412976 (+) 1419 WP_003054855.1 Fe-S cluster assembly protein SufB -
  FGCSD_RS02200 (FGCSD_0378) - 413151..414332 (-) 1182 WP_129555299.1 serine hydrolase -
  FGCSD_RS02205 (FGCSD_0379) pbp3 414471..415709 (-) 1239 WP_129555300.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  FGCSD_RS02210 (FGCSD_0380) amiA 416041..418011 (+) 1971 WP_129555301.1 peptide ABC transporter substrate-binding protein Regulator
  FGCSD_RS02215 (FGCSD_0381) amiC 418077..419579 (+) 1503 WP_129555302.1 ABC transporter permease Regulator
  FGCSD_RS02220 (FGCSD_0382) amiD 419579..420505 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  FGCSD_RS02225 (FGCSD_0383) amiE 420514..421584 (+) 1071 WP_129555303.1 ABC transporter ATP-binding protein Regulator
  FGCSD_RS02230 (FGCSD_0384) amiF 421577..422500 (+) 924 WP_129555304.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71974.27 Da        Isoelectric Point: 4.9448

>NTDB_id=70568 FGCSD_RS02210 WP_129555301.1 416041..418011(+) (amiA) [Streptococcus dysgalactiae strain Kdys0611]
MKKSRWLATLGVAVLSVSVLAACGGKNASGGSDATKAYKYVFVNDPKSLDYILTNGGGTTDVATQMVDGLLENDEYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAIDGKSEALYVVEDSIKNLKAYQNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSQGKEFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFSVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTIGENDFGSEVEKDLATMGDEWKDVN
LKDAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVVVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVDGGSVIQKLGVKAGESKDVVAATGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVSKAIPFSGGFSWAGAKGPLAYKGMKLQDKPVTAKQYEKAKEKWLKAKA
KSNADYAEKLADHVEK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=70568 FGCSD_RS02210 WP_129555301.1 416041..418011(+) (amiA) [Streptococcus dysgalactiae strain Kdys0611]
ATGAAGAAAAGTAGATGGTTAGCAACTCTAGGTGTTGCGGTATTATCAGTATCCGTTTTAGCAGCTTGTGGTGGCAAAAA
TGCCTCAGGCGGTTCAGATGCAACTAAAGCTTACAAATATGTGTTTGTTAACGATCCAAAATCGTTGGATTACATTTTAA
CAAATGGTGGCGGAACAACTGATGTGGCAACGCAAATGGTTGATGGTCTTTTGGAAAATGATGAGTATGGTAACTTGGTA
CCATCACTTGCTAAAGATTGGAAAGTTTCAAAAGATGGCCTAACCTATACTTATACTCTTCGTGATGGTGTTTCTTGGTA
CACGGCTGATGGTGAAGAATACGCACCTGTAACAGCAGAAGATTTTGTGACTGGTCTTAAACACGCGATTGATGGCAAGT
CTGAAGCTTTATATGTTGTCGAAGACTCCATCAAAAATTTGAAAGCTTACCAAAATGGTGAGGTCGATTTCAAAGAGGTC
GGTGTTAAAGCCCTTGACGATAAAACCGTTCAATATACTTTGAACAAACCGGAAAGTTACTGGAACTCAAAAACAACTTA
TAGCGTTCTCTTCCCAGTCAATGCGAAATTCTTGAAATCACAAGGTAAAGAGTTTGGGACAACAGATCCATCATCAATCC
TTGTTAATGGTGCTTATTTCTTGAGTGCCTTCACCTCAAAATCATCTATGGAATTCCATAAAAATGAAAACTACTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACCCAGGTTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCAGTGTTGCACGACTTTACCCAAATGACCCTACTTACAAATCAGCTAAGAAAAACTATGCTGATAACA
TTACTTATGGAATGTTGACTGGTGATATCCGTCATTTAACATGGAACTTGAACCGTACTTCTTTCAAAAATACTAAGAAA
GACCCTGCACAACAAGATGCCGGTAAGAAAGCTCTTAACAACAAGGACTTCCGTCAAGCTATCCAGTTTGCTTTTGACCG
TGCATCATTCCAAGCACAAACTGCAGGTCAAGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTGCCACCAACTTTTG
TGACCATCGGAGAAAATGACTTTGGTTCAGAAGTTGAAAAAGACCTTGCTACCATGGGTGATGAATGGAAAGATGTTAAT
TTAAAAGATGCTCAAGATGGATTTTATAATCCTGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCTTTGACAGC
TGAAGGGGTAACCTTCCCAGTTCAATTAGATTATCCTGTTGACCAAGCCAACGCAGCAACTGTTCAAGAGGCTCAATCCT
TTAAACAATCTGTTGAAGCATCACTTGGTAAAGAAAATGTTGTTGTCAATGTTCTTGAAACAGAAACCTCAACTCACGAA
GCTCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGACATCATTTCATCATGGTGGGGTCCAGACTACCAAGA
CCCACGTACCTACCTTGACATCATGAGTCCAGTGGATGGTGGATCTGTTATCCAAAAACTGGGAGTTAAAGCAGGTGAAA
GCAAAGATGTTGTGGCAGCTACAGGCCTTGATACCTACCAAACTCTTCTTGATGAAGCAGCAGCAATTACAGACGATAAC
GATGCTCGTTACAAAGCTTATGCAAAAGCACAAGCCTATCTTACTGATAGTGCTGTAGATATTCCGGTTGTGGCCTTGGG
TGGTACTCCTCGTGTTTCTAAAGCTATTCCATTTAGCGGCGGCTTCTCTTGGGCAGGTGCTAAAGGACCTCTAGCATATA
AAGGAATGAAACTTCAAGACAAACCTGTTACGGCAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAAGCAAAGGCT
AAATCAAACGCAGACTATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

50.681

100

0.511
  amiA3 Streptococcus thermophilus LMG 18311

49.547

100

0.5
  amiA3 Streptococcus thermophilus LMD-9

49.245

100

0.497

Multiple sequence alignment