Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   NLK52_RS18740 Genome accession   NZ_CP100436
Coordinates   3655213..3655332 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain MEC_B298     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3650213..3660332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLK52_RS18720 (NLK52_18720) albG 3650379..3651080 (+) 702 WP_015384931.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  NLK52_RS18725 (NLK52_18725) ywhL 3651086..3652459 (-) 1374 WP_015483837.1 YncE family protein -
  NLK52_RS18730 (NLK52_18730) ywhK 3652499..3653854 (-) 1356 WP_015384933.1 YncE family protein -
  NLK52_RS20715 - 3653851..3654081 (-) 231 WP_015483838.1 hypothetical protein -
  NLK52_RS18735 (NLK52_18735) rapF 3654084..3655229 (+) 1146 WP_015384935.1 response regulator aspartate phosphatase RapF Regulator
  NLK52_RS18740 (NLK52_18740) phrF 3655213..3655332 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  NLK52_RS18745 (NLK52_18745) - 3655560..3656036 (+) 477 WP_015384936.1 hypothetical protein -
  NLK52_RS18750 (NLK52_18750) - 3656296..3656982 (+) 687 WP_236822444.1 hypothetical protein -
  NLK52_RS18755 (NLK52_18755) - 3658458..3659105 (+) 648 WP_015384940.1 ABC transporter ATP-binding protein -
  NLK52_RS18760 (NLK52_18760) - 3659098..3659661 (+) 564 WP_015483840.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=705466 NLK52_RS18740 WP_009968329.1 3655213..3655332(+) (phrF) [Bacillus subtilis strain MEC_B298]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=705466 NLK52_RS18740 WP_009968329.1 3655213..3655332(+) (phrF) [Bacillus subtilis strain MEC_B298]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487