Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PF552_RS05580 Genome accession   NZ_CP115632
Coordinates   1162093..1163034 (+) Length   313 a.a.
NCBI ID   WP_031961018.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00063     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1157093..1168034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF552_RS05565 (PF552_05565) basA 1157517..1159364 (+) 1848 WP_031961022.1 acinetobactin non-ribosomal peptide synthetase subunit BasA -
  PF552_RS05570 (PF552_05570) basB 1159435..1161462 (-) 2028 WP_109067377.1 acinetobactin non-ribosomal peptide synthetase subunit BasB -
  PF552_RS05575 (PF552_05575) - 1161962..1162093 (+) 132 WP_001218004.1 hypothetical protein -
  PF552_RS05580 (PF552_05580) ceuB 1162093..1163034 (+) 942 WP_031961018.1 ferric acinetobactin ABC transporter permease subunit BauD Machinery gene
  PF552_RS05585 (PF552_05585) bauC 1163034..1163981 (+) 948 WP_031961017.1 ferric acinetobactin ABC transporter permease subunit BauC -
  PF552_RS05590 (PF552_05590) bauE 1163978..1164748 (+) 771 WP_000582117.1 ferric acinetobactin ABC transporter ATP-binding protein BauE -
  PF552_RS05595 (PF552_05595) bauB 1164755..1165723 (+) 969 WP_001104128.1 siderophore-binding periplasmic lipoprotein BauB -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34057.10 Da        Isoelectric Point: 8.4665

>NTDB_id=705367 PF552_RS05580 WP_031961018.1 1162093..1163034(+) (ceuB) [Acinetobacter baumannii strain 2022CK-00063]
MQFGLFCIFIILCICSLLLGAEQIQWSTLFSFSHESWLTLTASRIPRLITIVLTGIGLAVCGFILQHIVRNKFVEPETSG
GLDAAKLGILVSLTLVPVTSTLSKMIFAIIFCFIASLIYIAIIRRIRFRNTVLVPVIGLMYGSVLSALAEFYAYRFNILQ
SMQGWLLGDFSKIVQGHYEVIYIIFPIVVLTYLFAHRFTVIGMGEEMASSLGLSYATIAAIGLILVAITVSTTVITVGAI
PFVGLVVPNLVALKYGENLAKTLPIVALGGASLLLICDILGRSIIYPFEVPIGLTAGGVGGIIFLILILREFR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=705367 PF552_RS05580 WP_031961018.1 1162093..1163034(+) (ceuB) [Acinetobacter baumannii strain 2022CK-00063]
ATGCAATTCGGCTTATTCTGTATTTTTATCATTTTATGTATTTGCTCATTATTGCTCGGGGCTGAACAAATACAGTGGTC
TACCTTATTTTCTTTTTCTCATGAGAGTTGGCTCACTCTTACAGCCAGCCGTATTCCTCGTTTAATTACTATTGTGCTTA
CCGGTATCGGGTTGGCGGTATGTGGCTTCATCTTGCAGCATATTGTGCGTAACAAGTTTGTTGAACCGGAAACATCGGGT
GGTTTAGATGCTGCCAAACTGGGAATTTTAGTGTCATTAACTTTAGTTCCGGTAACCAGCACGTTGAGCAAGATGATATT
TGCGATCATTTTTTGTTTTATTGCCAGCTTAATTTATATCGCAATTATTCGCCGGATCCGTTTTAGAAATACGGTTTTAG
TACCGGTTATTGGTTTGATGTACGGCAGTGTACTGAGTGCCTTAGCTGAGTTTTATGCCTATCGCTTTAATATTTTACAA
AGTATGCAAGGGTGGCTTTTAGGAGATTTTTCAAAAATTGTCCAAGGCCACTATGAAGTTATTTACATTATTTTTCCGAT
TGTTGTCCTGACTTATCTTTTTGCACACCGCTTTACCGTAATTGGTATGGGGGAAGAGATGGCTTCTAGCTTAGGACTCA
GTTATGCGACTATAGCCGCCATTGGTTTGATACTGGTTGCTATTACAGTTTCGACCACAGTAATTACGGTTGGTGCTATT
CCTTTTGTCGGGCTCGTGGTCCCCAATTTAGTCGCACTGAAATACGGAGAAAACTTAGCTAAAACCTTGCCGATTGTAGC
GTTGGGTGGGGCGTCTCTATTACTGATTTGCGACATTCTTGGTCGCTCAATTATTTACCCATTTGAAGTGCCAATTGGAC
TTACCGCAGGTGGTGTAGGGGGAATTATTTTCCTCATCCTCATTTTGAGGGAGTTCAGATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

44.257

94.569

0.419