Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   NLY75_RS03245 Genome accession   NZ_CP100432
Coordinates   628996..630345 (+) Length   449 a.a.
NCBI ID   WP_023369692.1    Uniprot ID   -
Organism   Streptococcus suis T15     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 623996..635345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY75_RS03220 (NLY75_03220) - 625107..625766 (-) 660 WP_002935828.1 amino acid ABC transporter permease -
  NLY75_RS03225 (NLY75_03225) - 625781..626479 (-) 699 WP_015646621.1 amino acid ABC transporter permease -
  NLY75_RS03230 (NLY75_03230) - 626494..627333 (-) 840 WP_023369690.1 transporter substrate-binding domain-containing protein -
  NLY75_RS03235 (NLY75_03235) - 627344..628105 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  NLY75_RS03240 (NLY75_03240) micA 628299..629003 (+) 705 WP_002935840.1 response regulator YycF Regulator
  NLY75_RS03245 (NLY75_03245) micB 628996..630345 (+) 1350 WP_023369692.1 cell wall metabolism sensor histidine kinase VicK Regulator
  NLY75_RS03250 (NLY75_03250) vicX 630352..631155 (+) 804 WP_023369694.1 MBL fold metallo-hydrolase Regulator
  NLY75_RS03255 (NLY75_03255) - 631517..631897 (+) 381 Protein_588 ATP-binding cassette domain-containing protein -
  NLY75_RS03260 (NLY75_03260) pbp2b 631989..634064 (+) 2076 WP_023369698.1 penicillin-binding protein PBP2B -
  NLY75_RS03265 (NLY75_03265) recR 634073..634669 (+) 597 WP_002935848.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51091.19 Da        Isoelectric Point: 4.4889

>NTDB_id=705312 NLY75_RS03245 WP_023369692.1 628996..630345(+) (micB) [Streptococcus suis T15]
MINQLRYLMTTAEFWFVVILIGFLIALTVLLIENYRDNKQIKQLNQKVNALIEGNYADVLDMRGSPEITDMANSLNDLSE
VIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIGRIIMINDMAQKQLGLSSQKQEQYHLLEVLDLSDRYTLRDLLAQTPE
IVIDHINENEEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALT
ESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFILNRFDQMKNADSDKVYTIVRDYQISPIW
VEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKADLPRIFERFYRVDKARSRAQGGTGLG
LAIAKEIVKQHKGFIWAKSEYGYGSTFTIVLPYSKDIALDEWDDSDEEE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=705312 NLY75_RS03245 WP_023369692.1 628996..630345(+) (micB) [Streptococcus suis T15]
ATGATTAATCAATTACGTTATTTAATGACCACGGCAGAATTTTGGTTTGTTGTCATTTTGATTGGCTTTCTAATTGCTCT
GACGGTCCTTTTGATTGAAAACTATCGGGATAATAAGCAAATTAAGCAACTCAATCAAAAAGTCAATGCCTTAATTGAGG
GGAATTATGCAGATGTGTTAGACATGAGGGGAAGTCCTGAAATCACAGATATGGCGAATTCTCTTAATGATCTGTCCGAG
GTCATCCGCTTAACTCATGATAATTTAGAACAAGAAAAGACGCGTCTGACGTCCATCCTGTCCTATATGAGTGACGGTGT
TATTGCTACAGACCGTATCGGACGGATCATCATGATTAACGATATGGCCCAGAAACAGTTGGGGCTTTCTAGCCAAAAGC
AGGAGCAGTATCACCTGCTCGAGGTTTTAGATTTATCAGATCGTTATACATTGAGAGATTTGCTGGCTCAGACACCTGAG
ATTGTGATTGATCACATCAATGAAAATGAAGAATTTCTGACTTTACGTGCTAATTTTGCCACGATTCGTAGTGAGAGTGG
TCTGATTTCTGGCCTGGTAGTCGTCTTGCATGATATGACCGAGCAGGCCAAGGAAGAACGGGAACGTAGGCTATTTGTGT
CAAATGTGAGTCATGAATTGCGTACGCCATTGACTTCCGTTAAATCCTATCTAGAGGCTCTGGATGAGGGAGCGCTGACG
GAGTCTGTTGCACCGAGTTTTGTTAAGGTATCCTTAGATGAGACCAACCGCATGATGCGGATGATTACAGACCTCCTTAG
CTTATCGCGCATTGATAATCAAGTTGGTCAGATAGATGTCGAACTGATAAACTTTACTGCTTTTGTGACCTTTATTCTTA
ACCGTTTTGACCAAATGAAAAATGCTGATTCAGATAAGGTCTATACGATTGTTCGTGACTATCAAATCAGTCCTATTTGG
GTTGAGATTGATACAGATAAGATGACTCAGGTTTTAGATAATATCTTAAATAATGCCATTAAATATTCGCCAGACGGCGG
GACAATTACCTTCAGCATGAAGACCACAGATAGCCAGTTGATTGTATCCGTCTCAGACGAAGGTCTGGGGATTCCGAAAG
CAGATTTACCTAGAATTTTTGAACGATTTTATCGCGTAGACAAGGCACGATCTCGTGCCCAAGGTGGTACAGGTCTTGGT
TTAGCTATTGCAAAAGAAATCGTGAAACAACATAAGGGCTTTATCTGGGCTAAAAGTGAATATGGTTATGGCTCAACGTT
TACAATTGTCTTGCCGTACAGCAAGGACATCGCACTAGATGAGTGGGATGATTCAGATGAGGAAGAATAG

Domains

Predicted by InterproScan.

PAS fold (PAS)

(96-199)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

69.954

97.105

0.679
  vicK Streptococcus mutans UA159

70.471

89.755

0.633