Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   NLY75_RS03250 Genome accession   NZ_CP100432
Coordinates   630352..631155 (+) Length   267 a.a.
NCBI ID   WP_023369694.1    Uniprot ID   A0A822VJ97
Organism   Streptococcus suis T15     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 625352..636155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY75_RS03225 (NLY75_03225) - 625781..626479 (-) 699 WP_015646621.1 amino acid ABC transporter permease -
  NLY75_RS03230 (NLY75_03230) - 626494..627333 (-) 840 WP_023369690.1 transporter substrate-binding domain-containing protein -
  NLY75_RS03235 (NLY75_03235) - 627344..628105 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  NLY75_RS03240 (NLY75_03240) micA 628299..629003 (+) 705 WP_002935840.1 response regulator YycF Regulator
  NLY75_RS03245 (NLY75_03245) micB 628996..630345 (+) 1350 WP_023369692.1 cell wall metabolism sensor histidine kinase VicK Regulator
  NLY75_RS03250 (NLY75_03250) vicX 630352..631155 (+) 804 WP_023369694.1 MBL fold metallo-hydrolase Regulator
  NLY75_RS03255 (NLY75_03255) - 631517..631897 (+) 381 Protein_588 ATP-binding cassette domain-containing protein -
  NLY75_RS03260 (NLY75_03260) pbp2b 631989..634064 (+) 2076 WP_023369698.1 penicillin-binding protein PBP2B -
  NLY75_RS03265 (NLY75_03265) recR 634073..634669 (+) 597 WP_002935848.1 recombination mediator RecR -
  NLY75_RS03270 (NLY75_03270) - 634774..635820 (+) 1047 WP_023369700.1 D-alanine--D-alanine ligase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29672.84 Da        Isoelectric Point: 6.1694

>NTDB_id=705313 NLY75_RS03250 WP_023369694.1 630352..631155(+) (vicX) [Streptococcus suis T15]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEINRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGKRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=705313 NLY75_RS03250 WP_023369694.1 630352..631155(+) (vicX) [Streptococcus suis T15]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTAGCGGAAATTAATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGATCTAGATATTGAGTCATTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCTTATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAAACGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAATAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGTGTTGGAGTAGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACTAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822VJ97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.404

100

0.764