Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   NLY77_RS07285 Genome accession   NZ_CP100431
Coordinates   1446832..1447836 (-) Length   334 a.a.
NCBI ID   WP_014636430.1    Uniprot ID   -
Organism   Streptococcus suis strain 1521251     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1441832..1452836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY77_RS07270 (NLY77_07270) - 1442036..1443349 (-) 1314 WP_023369682.1 glycosyltransferase family 4 protein -
  NLY77_RS07275 (NLY77_07275) - 1443350..1444348 (-) 999 WP_024383885.1 glycosyltransferase family 4 protein -
  NLY77_RS07280 (NLY77_07280) - 1444658..1446403 (+) 1746 WP_172008853.1 FctA domain-containing protein -
  NLY77_RS07285 (NLY77_07285) ccpA 1446832..1447836 (-) 1005 WP_014636430.1 catabolite control protein A Regulator
  NLY77_RS07290 (NLY77_07290) - 1448046..1449125 (+) 1080 WP_014636431.1 Xaa-Pro peptidase family protein -
  NLY77_RS07295 (NLY77_07295) - 1449381..1449797 (-) 417 WP_014636432.1 PTS sugar transporter subunit IIA -
  NLY77_RS07300 (NLY77_07300) - 1449810..1450628 (-) 819 WP_014636433.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  NLY77_RS07305 (NLY77_07305) - 1450621..1451406 (-) 786 WP_014636434.1 PTS sugar transporter subunit IIC -
  NLY77_RS07310 (NLY77_07310) - 1451422..1451901 (-) 480 WP_023369675.1 PTS sugar transporter subunit IIB -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36788.94 Da        Isoelectric Point: 5.5173

>NTDB_id=705269 NLY77_RS07285 WP_014636430.1 1446832..1447836(-) (ccpA) [Streptococcus suis strain 1521251]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYSLAERILNA
GATAAYVAEDEIAAGLLNGVSDMGVKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VVLNHGIKVRKSTK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=705269 NLY77_RS07285 WP_014636430.1 1446832..1447836(-) (ccpA) [Streptococcus suis strain 1521251]
ATGTTAAACACTGACGATACGGTAACGATTTATGACGTTGCCCGCGAAGCAGGTGTATCCATGGCGACAGTATCGCGCGT
GGTAAATGGGAATAAAAACGTAAAGGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGACCGTTTGGATTATCGTCCAA
ATGCTGTTGCACGTGGCTTGGCCAGCAAGAAGACTACCACTGTGGGGGTTGTGATTCCAAATATTGCTAATGCTTATTTT
GCAACCTTGGCCAAAGGTATCGATGATATTGCCGATATGTACAAATACAATATCGTCCTAGCAAACAGTGATGAAAATGA
TGAGAAAGAAATCAATGTGGTGAATACCCTATTCTCAAAACAGGTGGACGGAATCATTTTCATGGGCTATCATTTGACAG
ACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCAATTGTTTTAGCTGGTACCGTGGACTTGGAGCACCAATTACCT
AGCGTCAATATTGACTATGCTGCCGCTAGTGTTGATGCAGTCAATCTATTAGCTAAGAACAACAAGAAAATTGCCTTTGT
ATCAGGGCCGCTTGTAGATGACATCAACGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGCTTGAAGGACAACGGAATCG
AGTTTAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACTCTCTAGCAGAACGTATTTTGAATGCT
GGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCTGGTTTATTGAATGGTGTCAGTGATATGGGCGTCAAGGT
TCCAGAAGACTTTGAAATCATTACAAGTGATGATTCCCTAGTGACCAAGTTTACCCGTCCAAACCTGACCTCTATCAATC
AGCCACTATACGATATTGGTGCAATTGCTATGCGTATGCTCACCAAAATCATGCATAAGGAAGAGTTGGAAAACCGTGAG
GTAGTTCTTAACCACGGAATCAAAGTACGGAAATCAACTAAGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.88

99.701

0.796

  ccpA Streptococcus gordonii str. Challis substr. CH1

79.58

99.701

0.793

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.912

99.102

0.584