Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NLG45_RS03210 Genome accession   NZ_CP100428
Coordinates   672804..673676 (-) Length   290 a.a.
NCBI ID   WP_254414382.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RMSA24     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 667804..678676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLG45_RS03200 (NLG45_03200) trmFO 669092..670399 (-) 1308 WP_217660584.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  NLG45_RS03205 (NLG45_03205) topA 670555..672630 (-) 2076 WP_001557331.1 type I DNA topoisomerase -
  NLG45_RS03210 (NLG45_03210) dprA 672804..673676 (-) 873 WP_254414382.1 DNA-processing protein DprA Machinery gene
  NLG45_RS03215 (NLG45_03215) sucD 674000..674908 (-) 909 WP_000110251.1 succinate--CoA ligase subunit alpha -
  NLG45_RS03220 (NLG45_03220) sucC 674930..676096 (-) 1167 WP_254414383.1 ADP-forming succinate--CoA ligase subunit beta -
  NLG45_RS03225 (NLG45_03225) - 676205..676972 (-) 768 WP_000176409.1 ribonuclease HII -
  NLG45_RS03230 (NLG45_03230) ylqF 676956..677840 (-) 885 WP_000236722.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33172.41 Da        Isoelectric Point: 8.3112

>NTDB_id=705155 NLG45_RS03210 WP_254414382.1 672804..673676(-) (dprA) [Staphylococcus aureus strain RMSA24]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEVSVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINLLSYPHTLAVVGSRLSGDYTLKALNHLFVSFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTSALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=705155 NLG45_RS03210 WP_254414382.1 672804..673676(-) (dprA) [Staphylococcus aureus strain RMSA24]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTTTCC
GAGTTGTTGTGAAGTAGATGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAGTTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCTCCTTAGTTATCCGCACACTTTAGCTGTCGTTGGGTCACGATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGTTTCATTTCAACAAATGAGTTTTTGTGTCGTTTCCGGGCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATCAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.347

100

0.683
  dprA Staphylococcus aureus N315

66.552

100

0.666
  dprA Lactococcus lactis subsp. cremoris KW2

38.214

96.552

0.369
  dprA Vibrio campbellii strain DS40M4

38.745

93.448

0.362