Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   L4174_RS02085 Genome accession   NZ_CP100425
Coordinates   449682..450569 (-) Length   295 a.a.
NCBI ID   WP_248143933.1    Uniprot ID   -
Organism   Photobacterium sp. CCB-ST2H9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444682..455569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4174_RS02060 (L4174_002060) secA 444774..447494 (+) 2721 WP_248143928.1 preprotein translocase subunit SecA -
  L4174_RS02065 (L4174_002065) mutT 447626..448024 (+) 399 WP_248143929.1 8-oxo-dGTP diphosphatase MutT -
  L4174_RS02070 (L4174_002070) yacG 448078..448278 (-) 201 WP_248143930.1 DNA gyrase inhibitor YacG -
  L4174_RS02075 (L4174_002075) zapD 448286..449038 (-) 753 WP_248143931.1 cell division protein ZapD -
  L4174_RS02080 (L4174_002080) coaE 449074..449685 (-) 612 WP_248143932.1 dephospho-CoA kinase -
  L4174_RS02085 (L4174_002085) pilD 449682..450569 (-) 888 WP_248143933.1 A24 family peptidase Machinery gene
  L4174_RS02090 (L4174_002090) - 450642..451865 (-) 1224 WP_248143934.1 type II secretion system F family protein -
  L4174_RS02095 (L4174_002095) pilB 451862..453544 (-) 1683 WP_248143935.1 GspE/PulE family protein Machinery gene
  L4174_RS24075 - 453547..454038 (-) 492 WP_305885152.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32325.48 Da        Isoelectric Point: 7.3023

>NTDB_id=705108 L4174_RS02085 WP_248143933.1 449682..450569(-) (pilD) [Photobacterium sp. CCB-ST2H9]
MALLIDYPWLYPLAAALLGLIIGSFLNVVIHRLPIMMERQWRADCAACFPEYGPVETQPAFNLSVPASHCPHCQHRIRAW
ENIPVISWLVLHGRCSHCKQKISARYPAIEFLSSLAALTVALVLPPSVWSLAVIAASFVLIALTFIDIDKMLLPDQLTLP
LLWGGLLLALLGVGPVSLESAVIGAMAGYLSLWSLYWLFKLLTGKEGMGYGDFKLLAALGAWAGWQLLPFIVLLSSLLGT
VCGIILLRMQRSESENTAQTPFSFGPYLALAGWAALLWGSPVLTWYVGTYLGYAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=705108 L4174_RS02085 WP_248143933.1 449682..450569(-) (pilD) [Photobacterium sp. CCB-ST2H9]
ATGGCACTGCTGATCGACTATCCCTGGCTTTATCCTCTTGCTGCCGCCCTTCTGGGCCTGATCATCGGCAGTTTTCTGAA
TGTGGTCATTCACCGCTTGCCGATCATGATGGAAAGACAGTGGCGTGCAGACTGTGCAGCCTGCTTTCCTGAATACGGTC
CTGTCGAGACGCAGCCAGCCTTCAATCTCAGCGTACCGGCGTCACACTGTCCGCATTGCCAGCACCGCATCCGGGCATGG
GAAAATATCCCTGTCATCAGTTGGTTAGTGCTACACGGCCGGTGCAGTCACTGCAAACAGAAAATCAGCGCCCGCTACCC
TGCGATTGAGTTCTTATCTTCTCTGGCAGCGCTGACGGTTGCACTGGTCCTGCCTCCATCAGTCTGGAGTCTGGCCGTGA
TCGCTGCCAGTTTTGTGCTGATTGCTCTGACGTTTATCGACATCGACAAAATGCTGCTGCCGGATCAGCTCACTCTTCCC
CTGCTCTGGGGGGGACTGCTGCTGGCATTGCTGGGAGTCGGACCGGTCAGTCTGGAATCTGCGGTCATTGGCGCTATGGC
CGGTTACCTGTCACTCTGGAGCCTATACTGGCTCTTCAAACTGCTGACCGGCAAAGAAGGCATGGGATACGGCGATTTCA
AACTTCTGGCGGCTCTGGGCGCCTGGGCAGGATGGCAGTTACTGCCTTTTATCGTGCTGCTATCTTCCTTGCTTGGCACT
GTCTGTGGCATCATTTTATTACGTATGCAACGCAGTGAATCCGAAAATACTGCACAGACACCGTTTTCATTTGGCCCCTA
CCTCGCACTTGCCGGCTGGGCAGCCTTACTGTGGGGCTCTCCGGTTCTGACGTGGTATGTCGGCACTTATTTAGGATATG
CGCTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)

Type IV leader peptidase family (Peptidase_A24)

(137-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

63.729

100

0.637
  pilD Vibrio campbellii strain DS40M4

56.849

98.983

0.563
  pilD Acinetobacter baumannii D1279779

52.899

93.559

0.495
  pilD Acinetobacter nosocomialis M2

52.174

93.559

0.488
  pilD Neisseria gonorrhoeae MS11

48.496

90.169

0.437