Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   NIN90_RS13830 Genome accession   NZ_CP100422
Coordinates   2974367..2974999 (+) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio furnissii strain 104486766     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2969367..2979999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIN90_RS13810 - 2971284..2971757 (+) 474 WP_004728586.1 TIGR02444 family protein -
  NIN90_RS13815 - 2971885..2972862 (+) 978 WP_232658219.1 hydrolase -
  NIN90_RS13820 - 2972951..2973160 (+) 210 WP_004728584.1 YheU family protein -
  NIN90_RS13825 - 2973255..2974124 (+) 870 WP_004728583.1 phosphoribulokinase -
  NIN90_RS13830 crp 2974367..2974999 (+) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  NIN90_RS13835 - 2975082..2975876 (-) 795 WP_055465827.1 DUF1338 domain-containing protein -
  NIN90_RS13840 astD 2976060..2977517 (-) 1458 WP_232658220.1 succinylglutamate-semialdehyde dehydrogenase -
  NIN90_RS13845 astA 2977551..2978570 (-) 1020 WP_004728579.1 arginine N-succinyltransferase -
  NIN90_RS13850 - 2978670..2979881 (-) 1212 WP_254413486.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=705082 NIN90_RS13830 WP_004728582.1 2974367..2974999(+) (crp) [Vibrio furnissii strain 104486766]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=705082 NIN90_RS13830 WP_004728582.1 2974367..2974999(+) (crp) [Vibrio furnissii strain 104486766]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTGATTCACGCGGGCGAGAAAGCAGAAACGTTGTACTACATCGTCAAAGGTTCTGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTGTCTTACCTCAACCAAGGTGACTTCATCGGTGAGCTTGGCTTGTTTGAAGAAGGT
CAGGAGCGTACTGCCTGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCGGAAATTTCATTTAAGAAATTCCGTCAGCTGAT
TCAGGTTAACCCGGACATCCTGATGCGCCTATCTGGTCAGATGGCTCGCCGTCTACAAGTGACCAGCCAAAAAGTGGGTG
ACTTGGCGTTCTTAGACGTAACCGGTCGTATTGCACAGACCCTACTGAACTTGGCGAAACAACCCGACGCGATGACTCAC
CCAGATGGCATGCAGATTAAGATCACTCGTCAAGAGATTGGTCAAATCGTTGGCTGTTCACGTGAAACCGTGGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATTTCTGCACACGGTAAAACCATCGTGGTGTACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467