Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   H7675_RS09180 Genome accession   NZ_AP023389
Coordinates   1838858..1839964 (+) Length   368 a.a.
NCBI ID   WP_184004749.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain KUN-0012590     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1833858..1844964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7675_RS09160 (KUN2590_17640) hasA 1834536..1835795 (+) 1260 WP_002982042.1 hyaluronan synthase HasA -
  H7675_RS09165 (KUN2590_17650) hasB 1835831..1837039 (+) 1209 WP_009880737.1 UDP-glucose 6-dehydrogenase HasB -
  H7675_RS09170 (KUN2590_17670) hasC 1837221..1838135 (+) 915 WP_002982024.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  H7675_RS09175 (KUN2590_17680) yaaA 1838443..1838856 (+) 414 WP_053039078.1 S4 domain-containing protein YaaA -
  H7675_RS09180 (KUN2590_17690) recF 1838858..1839964 (+) 1107 WP_184004749.1 DNA replication/repair protein RecF Machinery gene
  H7675_RS09185 (KUN2590_17700) - 1840021..1840884 (-) 864 WP_002992310.1 GRP family sugar transporter -
  H7675_RS09190 (KUN2590_17710) guaB 1841086..1842567 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  H7675_RS09195 (KUN2590_17720) trpS 1842875..1843897 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41771.69 Da        Isoelectric Point: 8.3976

>NTDB_id=70505 H7675_RS09180 WP_184004749.1 1838858..1839964(+) (recF) [Streptococcus pyogenes strain KUN-0012590]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKALIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNDLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNQQKDFFRKNTSVGPHRDNLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQVDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=70505 H7675_RS09180 WP_184004749.1 1838858..1839964(+) (recF) [Streptococcus pyogenes strain KUN-0012590]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCATCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGCATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
ATTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCAGCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATAACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAACCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTAACAAAAGGAACCGTTCAAGTTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

44.92

100

0.457

Multiple sequence alignment