Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NKG37_RS06230 Genome accession   NZ_CP100420
Coordinates   1341017..1341535 (-) Length   172 a.a.
NCBI ID   WP_016201487.1    Uniprot ID   -
Organism   Niallia sp. RD1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1336017..1346535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKG37_RS06210 (NKG37_06210) dnaB 1336206..1337570 (-) 1365 WP_016201491.1 replicative DNA helicase -
  NKG37_RS06215 (NKG37_06215) rplI 1337817..1338266 (-) 450 WP_101729004.1 50S ribosomal protein L9 -
  NKG37_RS06220 (NKG37_06220) - 1338263..1340236 (-) 1974 WP_101729005.1 DHH family phosphoesterase -
  NKG37_RS06225 (NKG37_06225) rpsR 1340739..1340975 (-) 237 WP_016201488.1 30S ribosomal protein S18 -
  NKG37_RS06230 (NKG37_06230) ssbA 1341017..1341535 (-) 519 WP_016201487.1 single-stranded DNA-binding protein Machinery gene
  NKG37_RS06235 (NKG37_06235) rpsF 1341589..1341879 (-) 291 WP_016201486.1 30S ribosomal protein S6 -
  NKG37_RS06240 (NKG37_06240) - 1342056..1343207 (-) 1152 WP_169189582.1 glycosyltransferase family 1 protein -
  NKG37_RS06245 (NKG37_06245) ychF 1343475..1344575 (-) 1101 WP_016201484.1 redox-regulated ATPase YchF -
  NKG37_RS06250 (NKG37_06250) - 1344984..1345184 (-) 201 WP_016201483.1 DUF951 domain-containing protein -
  NKG37_RS06255 (NKG37_06255) - 1345203..1346054 (-) 852 WP_101729008.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19344.17 Da        Isoelectric Point: 4.8107

>NTDB_id=705010 NKG37_RS06230 WP_016201487.1 1341017..1341535(-) (ssbA) [Niallia sp. RD1]
MMNRVVLVGRLTKDPDLRYTPSGVAVASFTLAVNRTFTNQQGEREADFINCVIWRKPAENVANFLKKGSLAGVDGRIQTR
SYDGQDGKRVYVTEVLAESVQFLEPRNSSGNNRSDNMNYGAPREQDNPFGGSNNYQNQRPQTNRNNQDYTRVDEDPFANS
GQIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=705010 NKG37_RS06230 WP_016201487.1 1341017..1341535(-) (ssbA) [Niallia sp. RD1]
ATGATGAATCGGGTAGTTCTTGTTGGCCGTCTAACGAAGGATCCAGATCTACGTTATACACCGAGTGGAGTTGCTGTTGC
ATCTTTCACACTTGCAGTAAACCGTACGTTTACAAACCAGCAAGGAGAAAGAGAAGCGGACTTTATTAACTGTGTTATTT
GGAGAAAACCAGCAGAAAACGTAGCTAATTTCTTGAAAAAAGGAAGTTTAGCAGGTGTTGATGGTCGTATTCAAACTCGT
AGCTATGATGGACAAGACGGAAAACGCGTGTATGTAACAGAAGTATTAGCAGAAAGTGTTCAGTTCTTAGAACCTAGAAA
CAGCTCTGGTAATAATAGAAGTGACAACATGAATTATGGGGCACCAAGAGAACAAGATAATCCTTTTGGAGGATCAAATA
ATTATCAGAATCAGCGACCTCAAACAAATAGAAACAATCAAGATTATACAAGAGTGGATGAAGATCCATTTGCAAATAGC
GGACAAATCGATATTTCAGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.934

100

0.698
  ssb Latilactobacillus sakei subsp. sakei 23K

57.803

100

0.581
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.628

0.401