Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   PDI73_RS00240 Genome accession   NZ_CP115479
Coordinates   51267..52049 (+) Length   260 a.a.
NCBI ID   WP_010905316.1    Uniprot ID   Q9CIG2
Organism   Lactococcus lactis strain EP2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 46267..57049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS00215 (PDI73_00215) vicX 46292..47104 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  PDI73_RS00220 (PDI73_00220) vicK 47273..48715 (-) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  PDI73_RS00225 (PDI73_00225) yycF 48708..49409 (-) 702 WP_003131580.1 response regulator YycF -
  PDI73_RS00230 (PDI73_00230) tmk 49587..50222 (+) 636 WP_012897230.1 dTMP kinase -
  PDI73_RS00235 (PDI73_00235) - 50355..51215 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  PDI73_RS00240 (PDI73_00240) yaaT 51267..52049 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator
  PDI73_RS00245 (PDI73_00245) yabA 52042..52368 (+) 327 WP_011675472.1 DNA replication initiation control protein YabA -
  PDI73_RS00250 (PDI73_00250) rsmI 52368..53243 (+) 876 WP_033900473.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PDI73_RS00255 (PDI73_00255) - 53320..53511 (-) 192 WP_003131566.1 hypothetical protein -
  PDI73_RS00260 (PDI73_00260) mvk 53574..54506 (-) 933 WP_003131564.1 mevalonate kinase -
  PDI73_RS00265 (PDI73_00265) mvaD 54812..55768 (+) 957 WP_277730239.1 diphosphomevalonate decarboxylase -
  PDI73_RS00270 (PDI73_00270) - 55755..56744 (+) 990 WP_033900477.1 mevalonate kinase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29803.27 Da        Isoelectric Point: 6.0566

>NTDB_id=704762 PDI73_RS00240 WP_010905316.1 51267..52049(+) (yaaT) [Lactococcus lactis strain EP2]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVREVNEDDLQVIAKLEERSKQAK
DKVRQLVIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNKLNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGKGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=704762 PDI73_RS00240 WP_010905316.1 51267..52049(+) (yaaT) [Lactococcus lactis strain EP2]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGTTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCGAATCTTGAAATTC
ACCACACGATTGTGCGTGAAGTAAATGAGGATGATCTCCAAGTTATTGCAAAACTTGAAGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTGTCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTCGACCAAATGCA
ACTTTTTATTTCGTTTACAGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAACAACTTTTAGAATTA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCTAAAATTCATGGTGGACTTGGACCTTGTGGACGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATAA
ATTGAACGGTCTTTGCGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACCTCAGAAGGAAAAGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

46.119

84.231

0.388