Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   PDI73_RS00215 Genome accession   NZ_CP115479
Coordinates   46292..47104 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis strain EP2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 41292..52104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS00190 (PDI73_00190) ytpR 41518..42144 (+) 627 WP_003131594.1 YtpR family tRNA-binding protein -
  PDI73_RS00195 (PDI73_00195) - 42306..43646 (+) 1341 WP_023188995.1 FAD-dependent oxidoreductase -
  PDI73_RS00200 (PDI73_00200) - 43736..44125 (+) 390 WP_010905314.1 single-stranded DNA-binding protein -
  PDI73_RS00205 (PDI73_00205) groES 44245..44529 (+) 285 WP_003131589.1 co-chaperone GroES -
  PDI73_RS00210 (PDI73_00210) groL 44617..46245 (+) 1629 WP_003131585.1 chaperonin GroEL -
  PDI73_RS00215 (PDI73_00215) vicX 46292..47104 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  PDI73_RS00220 (PDI73_00220) vicK 47273..48715 (-) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  PDI73_RS00225 (PDI73_00225) yycF 48708..49409 (-) 702 WP_003131580.1 response regulator YycF -
  PDI73_RS00230 (PDI73_00230) tmk 49587..50222 (+) 636 WP_012897230.1 dTMP kinase -
  PDI73_RS00235 (PDI73_00235) - 50355..51215 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  PDI73_RS00240 (PDI73_00240) yaaT 51267..52049 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=704759 PDI73_RS00215 WP_003131583.1 46292..47104(-) (vicX) [Lactococcus lactis strain EP2]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=704759 PDI73_RS00215 WP_003131583.1 46292..47104(-) (vicX) [Lactococcus lactis strain EP2]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACCCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCCATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAGAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAGGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATCTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACCTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685