NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	PDI59_RS08045	Genome accession	NZ_CP115478
Coordinates	1617858..1618460 (-)	Length	200 a.a.
NCBI ID	WP_000271550.1	Uniprot ID	P66748
Organism	Staphylococcus aureus strain HP20814-062
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1612858..1623460

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PDI59_RS08025 (PDI59_08030)	yajC	1614354..1614614 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
PDI59_RS08030 (PDI59_08035)	tgt	1614633..1615772 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
PDI59_RS08035 (PDI59_08040)	queA	1615795..1616820 (-)	1026	WP_001019178.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
PDI59_RS08040 (PDI59_08045)	ruvB	1616822..1617826 (-)	1005	WP_001005768.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
PDI59_RS08045 (PDI59_08050)	ruvA	1617858..1618460 (-)	603	WP_000271550.1	Holliday junction branch migration protein RuvA	Machinery gene
PDI59_RS08050 (PDI59_08055)	-	1618474..1618929 (-)	456	WP_000368902.1	ACT domain-containing protein	-
PDI59_RS08055 (PDI59_08060)	obgE	1618942..1620234 (-)	1293	WP_000496100.1	GTPase ObgE	-
PDI59_RS08060 (PDI59_08065)	rpmA	1620588..1620872 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
PDI59_RS08065 (PDI59_08070)	-	1620884..1621204 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
PDI59_RS08070 (PDI59_08075)	rplU	1621210..1621518 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
PDI59_RS08075 (PDI59_08080)	mreD	1621754..1622284 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
PDI59_RS08080 (PDI59_08085)	mreC	1622284..1623126 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
PDI59_RS08085 (PDI59_08090)	-	1623325..1623444 (-)	120	WP_000840602.1	hypothetical protein	-

Sequence

Protein

Download Length: 200 a.a. Molecular weight: 22281.50 Da Isoelectric Point: 6.1244

                                >NTDB_id=704728 PDI59_RS08045 WP_000271550.1 1617858..1618460(-) (ruvA) [Staphylococcus aureus strain HP20814-062]

MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI

GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML

ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

Download Length: 603 bp

                                >NTDB_id=704728 PDI59_RS08045 WP_000271550.1 1617858..1618460(-) (ruvA) [Staphylococcus aureus strain HP20814-062]

ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA

AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCGTACATCTTTAATTGTTCGTG

AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT

GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC

GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA

CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA

GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT

TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	P66748

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	43.216	99.5	0.43

Detailed information NTG0704728