Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EL388_RS03050 Genome accession   NZ_AP018721
Coordinates   552115..553425 (+) Length   436 a.a.
NCBI ID   WP_126459412.1    Uniprot ID   A0A4R3K0I0
Organism   Sulfuritortus calidifontis strain J1A     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 547115..558425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL388_RS03025 - 548348..548983 (+) 636 WP_232019165.1 4Fe-4S dicluster domain-containing protein -
  EL388_RS03030 - 548997..549893 (+) 897 WP_126459400.1 CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein -
  EL388_RS03035 - 550007..550315 (+) 309 WP_126459403.1 general secretion pathway protein GspF -
  EL388_RS03040 - 550308..550529 (+) 222 WP_126459406.1 PP0621 family protein -
  EL388_RS03045 - 550534..552102 (+) 1569 WP_126459409.1 sensor histidine kinase -
  EL388_RS03050 pilR 552115..553425 (+) 1311 WP_126459412.1 sigma-54-dependent transcriptional regulator Regulator
  EL388_RS03055 - 553422..554423 (-) 1002 WP_126459415.1 sodium:calcium antiporter -
  EL388_RS03060 - 554479..554823 (+) 345 WP_197721813.1 thioredoxin family protein -
  EL388_RS03065 ampD 554823..555383 (+) 561 WP_126459418.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  EL388_RS03070 panD 555650..556030 (-) 381 WP_126459421.1 aspartate 1-decarboxylase -
  EL388_RS03075 panC 556071..556904 (-) 834 WP_126459424.1 pantoate--beta-alanine ligase -
  EL388_RS03080 panB 556907..557698 (-) 792 WP_126459427.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  EL388_RS03085 - 557698..558339 (-) 642 WP_126459430.1 deoxynucleoside kinase -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 47450.19 Da        Isoelectric Point: 5.3927

>NTDB_id=70471 EL388_RS03050 WP_126459412.1 552115..553425(+) (pilR) [Sulfuritortus calidifontis strain J1A]
MAAPTVLIVDDEPDLLDLVELTLVRMGLDVERAKTVAEAKARLQARHFELCLTDMRLPDGEGLEIVRHVAETSPTTPVAV
ITAFGSADNAVAALKAGAFDYVSKPVSLEQLRALVRTALKTPDVEPAPESTQGLVGESPAMRQVRGLVEKVARSQAPVFI
HGETGTGKEVAARLIHGKSHRAGKPFVAVNCGAIPENLMESEFFGYRKGAFTGAEADRDGFFQAADGGTLFLDEVADLPM
AMQVKLLRAIQEKRVRRVGGPQEETVDVRLISASHQDLARAVEAGRFRHDLFYRLNVIELKMPPLRERREDIPALVDHIM
TRYGLGQAARLSEAAMAALMTYSYPGNVRELENILERAFALSEGELGPADLNLAPEPVPSGDRSGQQSLQDYLDAVERQA
VLAALEQNGGNKTAAAKQLGVTFRSLRYRLERLGID

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=70471 EL388_RS03050 WP_126459412.1 552115..553425(+) (pilR) [Sulfuritortus calidifontis strain J1A]
ATGGCCGCACCCACCGTGTTGATCGTCGATGACGAACCCGATCTGCTCGATCTGGTCGAGCTGACCCTGGTGCGCATGGG
CCTCGATGTCGAGCGGGCGAAGACCGTGGCCGAGGCCAAGGCCCGCCTGCAGGCAAGGCACTTCGAATTGTGTTTGACCG
ACATGCGACTGCCCGATGGCGAGGGCCTGGAGATCGTGCGCCATGTCGCCGAAACCAGCCCGACGACGCCCGTGGCGGTG
ATCACCGCCTTCGGTTCGGCCGACAACGCGGTGGCCGCGCTCAAGGCCGGCGCTTTCGATTACGTGTCCAAGCCGGTCAG
CCTGGAGCAACTGCGTGCCTTGGTGCGCACGGCGCTGAAGACGCCGGACGTCGAGCCGGCGCCGGAGTCGACACAAGGAC
TGGTCGGCGAGTCGCCGGCCATGCGGCAGGTGCGCGGCCTGGTCGAGAAGGTGGCGCGCAGCCAGGCGCCGGTCTTCATC
CACGGCGAGACCGGCACCGGAAAGGAGGTCGCGGCGCGGCTGATCCACGGCAAGAGCCATCGGGCCGGCAAGCCCTTTGT
CGCGGTGAACTGTGGCGCGATCCCGGAAAACCTGATGGAGAGCGAGTTCTTCGGTTATCGCAAGGGCGCGTTCACCGGGG
CCGAGGCCGACCGCGACGGTTTCTTCCAGGCGGCCGACGGCGGCACCCTGTTCCTCGACGAGGTGGCCGACCTGCCCATG
GCCATGCAGGTCAAGCTCTTGCGCGCCATCCAGGAGAAGCGGGTGCGCCGGGTCGGCGGCCCCCAGGAGGAAACGGTCGA
CGTGCGCCTGATCAGCGCCTCGCACCAGGACCTGGCCCGTGCGGTGGAGGCCGGCCGTTTCCGGCACGATCTCTTTTACC
GGCTCAACGTCATCGAACTGAAGATGCCACCTTTGCGCGAGCGGCGCGAGGATATCCCGGCCCTGGTCGACCACATCATG
ACGCGCTACGGCCTTGGCCAGGCGGCCCGTTTGAGCGAGGCGGCGATGGCGGCGCTGATGACCTACAGCTACCCGGGCAA
CGTGCGCGAACTGGAGAACATCCTGGAACGGGCCTTCGCCCTGAGCGAGGGCGAACTCGGCCCGGCCGATCTCAACCTGG
CGCCGGAGCCGGTGCCCAGTGGCGACCGGAGCGGCCAGCAATCCTTGCAGGACTATCTGGATGCGGTCGAGCGTCAGGCG
GTGCTCGCCGCGCTGGAGCAGAACGGCGGCAACAAGACGGCTGCCGCCAAGCAACTGGGCGTGACCTTCCGCTCGCTGCG
CTACCGGTTGGAGCGGCTGGGCATCGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(393-432)

Sigma-54 interaction domain (Sigma54_activat)

(134-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R3K0I0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

59.06

100

0.606
  pilR Acinetobacter baumannii strain A118

48.707

100

0.518
  luxO Vibrio cholerae strain A1552

37.783

100

0.383

Multiple sequence alignment