Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EL335_RS03285 Genome accession   NZ_AP018718
Coordinates   664181..664972 (+) Length   263 a.a.
NCBI ID   WP_126444230.1    Uniprot ID   -
Organism   Sulfuricystis multivorans strain J5B     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 659181..669972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL335_RS03265 phaR 660134..660697 (-) 564 WP_126444226.1 polyhydroxyalkanoate synthesis repressor PhaR -
  EL335_RS03270 phaC 660727..662337 (-) 1611 WP_284155426.1 class I poly(R)-hydroxyalkanoic acid synthase -
  EL335_RS03275 pgeF 662457..663242 (-) 786 WP_126444228.1 peptidoglycan editing factor PgeF -
  EL335_RS03280 rluD 663232..664155 (-) 924 WP_284155427.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EL335_RS03285 comL 664181..664972 (+) 792 WP_126444230.1 outer membrane protein assembly factor BamD Machinery gene
  EL335_RS03290 rlmB 665190..665927 (-) 738 WP_126444231.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  EL335_RS03295 - 665917..666828 (-) 912 WP_126444232.1 D-hexose-6-phosphate mutarotase -
  EL335_RS03300 - 666831..667277 (-) 447 WP_126444233.1 HEAT repeat domain-containing protein -
  EL335_RS03305 rnr 667274..669472 (-) 2199 WP_126444234.1 ribonuclease R -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30022.36 Da        Isoelectric Point: 7.4189

>NTDB_id=70445 EL335_RS03285 WP_126444230.1 664181..664972(+) (comL) [Sulfuricystis multivorans strain J5B]
MRSLSLLVLFLLVLIGGCGLLPEQVDETAGWSANKLYAEAKSAMADGAYDKAVKYFEKLEARYPYGRYAQQAQIETAYAY
YKQDEKALALAACDRFIRLHPNHPHVDYVYYLKGLINFNEDLGLLGYISMQDPSERDPKAAQESFAAFKELVTRFPDSKY
AKDASLRMAYLVNALASHEVHVARYYLKRGAYVAAANRAQHAIKTYPDAPAIEEALFIMVKAYDALGMNDLRDDAERVMK
KNFPNSEYFKRGLDKPEPWWKLW

Nucleotide


Download         Length: 792 bp        

>NTDB_id=70445 EL335_RS03285 WP_126444230.1 664181..664972(+) (comL) [Sulfuricystis multivorans strain J5B]
ATGCGCAGTTTATCCCTGCTGGTCCTGTTCCTGCTCGTCCTCATCGGCGGCTGCGGCTTGCTGCCCGAACAGGTCGACGA
GACGGCCGGCTGGTCGGCCAACAAGCTCTACGCCGAAGCCAAGAGCGCGATGGCGGACGGCGCCTACGATAAGGCCGTCA
AGTATTTCGAGAAGCTCGAAGCGCGCTACCCTTACGGCCGCTATGCGCAGCAGGCGCAGATCGAAACCGCCTATGCCTAT
TACAAACAGGACGAGAAGGCGCTCGCCCTGGCCGCCTGCGACCGCTTCATCCGGCTGCATCCGAACCATCCCCATGTCGA
TTACGTCTATTACCTGAAAGGGCTGATCAATTTCAACGAGGATCTCGGCCTGCTCGGTTACATCAGCATGCAGGATCCGA
GCGAACGCGATCCAAAGGCGGCACAGGAGTCCTTCGCGGCGTTCAAAGAGCTGGTCACCCGGTTCCCGGACAGCAAGTAT
GCCAAGGATGCGAGCCTGCGCATGGCCTATCTGGTCAATGCGCTCGCTTCGCATGAGGTGCATGTTGCGCGCTATTACCT
GAAGCGCGGCGCCTATGTCGCCGCCGCCAACCGCGCGCAGCACGCGATCAAGACCTACCCCGACGCGCCGGCCATCGAGG
AGGCGCTGTTCATCATGGTCAAGGCCTATGATGCGCTCGGCATGAACGATCTGCGCGACGACGCCGAACGGGTGATGAAG
AAGAACTTCCCCAACAGCGAGTATTTCAAGCGCGGGCTCGACAAGCCCGAGCCGTGGTGGAAGCTCTGGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(33-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

50

99.62

0.498
  comL Neisseria gonorrhoeae MS11

48.473

99.62

0.483

Multiple sequence alignment