Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H7675_RS02330 Genome accession   NZ_AP023389
Coordinates   440196..440978 (+) Length   260 a.a.
NCBI ID   WP_136285961.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain KUN-0012590     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 435196..445978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7675_RS02310 (KUN2590_04040) - 435533..436498 (-) 966 WP_002983258.1 asparaginase -
  H7675_RS02315 (KUN2590_04050) - 436570..437958 (+) 1389 WP_136281496.1 Cof-type HAD-IIB family hydrolase -
  H7675_RS02320 (KUN2590_04060) - 438081..438533 (-) 453 WP_002992571.1 universal stress protein -
  H7675_RS02325 (KUN2590_04070) - 438764..439978 (+) 1215 WP_011184883.1 pyridoxal phosphate-dependent aminotransferase -
  H7675_RS02330 (KUN2590_04080) codY 440196..440978 (+) 783 WP_136285961.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H7675_RS02335 (KUN2590_04090) - 441125..441679 (+) 555 WP_002983281.1 cysteine hydrolase family protein -
  H7675_RS02340 - 442138..442458 (+) 321 Protein_414 putative PEP-binding protein -
  H7675_RS02345 (KUN2590_04100) gatC 442690..442992 (+) 303 WP_002988561.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  H7675_RS02350 (KUN2590_04110) gatA 442992..444458 (+) 1467 WP_136285959.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  H7675_RS02355 (KUN2590_04120) gatB 444458..445897 (+) 1440 WP_011054945.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28660.79 Da        Isoelectric Point: 4.5611

>NTDB_id=70445 H7675_RS02330 WP_136285961.1 440196..440978(+) (codY) [Streptococcus pyogenes strain KUN-0012590]
MPNLLEKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGTLLGYAMKYKTNTDRVEEFFEAKQFPDTYV
KAASRVYDTEANLSVENELTIFPVESKDTYPGGLTTIAPIYGGGMRLGSLIIWRNDNEFNDDDLILVEISSTVVGIQLLN
LQTENLEDTIRKQTAVNMAINTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFAKLKEF

Nucleotide


Download         Length: 783 bp        

>NTDB_id=70445 H7675_RS02330 WP_136285961.1 440196..440978(+) (codY) [Streptococcus pyogenes strain KUN-0012590]
ATGCCTAACTTATTAGAAAAAACTCGTAAAATCACATCTATTTTGCAGCGTTCCGTAGATAGCCTAGAAACAGAATTACC
GTATAACACAATGGCATCTCGCCTAGCAGATATCATTGACTGCAATGCTTGTATTATCAATGGCGGCGGCACATTGCTTG
GTTATGCCATGAAATATAAAACTAACACTGATCGTGTTGAGGAATTTTTTGAAGCTAAACAATTTCCAGATACTTATGTA
AAGGCTGCTAGCCGAGTTTACGATACAGAAGCTAACCTTTCTGTCGAAAATGAGTTGACTATATTCCCTGTTGAGTCTAA
AGACACTTATCCAGGAGGTCTAACGACTATTGCGCCGATTTATGGTGGAGGGATGCGCCTTGGATCACTCATTATCTGGC
GTAATGACAATGAGTTTAATGATGATGATTTGATTTTGGTTGAGATCTCAAGTACTGTTGTGGGGATTCAATTATTAAAT
CTTCAGACAGAAAACTTAGAAGACACCATCCGTAAACAAACAGCGGTCAACATGGCAATTAATACGCTTTCTTATTCAGA
AATGAAAGCTGTTGCAGCAATTCTTGGAGAGTTAGATGGTAATGAAGGACGATTGACAGCTTCTGTTATTGCTGATCGTA
TTGGTATTACCCGTTCTGTTATTGTCAATGCTCTGCGTAAATTAGAAAGTGCAGGGATTATTGAAAGTCGTTCTCTTGGT
ATGAAAGGGACATACCTCAAAGTTATCAACGAAGGTATTTTTGCTAAATTAAAAGAATTTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.148

98.846

0.654
  codY Bacillus subtilis subsp. subtilis str. 168

51.765

98.077

0.508

Multiple sequence alignment