Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   PDI56_RS01925 Genome accession   NZ_CP115473
Coordinates   350454..351056 (+) Length   200 a.a.
NCBI ID   WP_000271550.1    Uniprot ID   P66748
Organism   Staphylococcus aureus strain AF4004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 345454..356056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI56_RS01885 (PDI56_01880) - 345470..345589 (+) 120 WP_000840602.1 hypothetical protein -
  PDI56_RS01890 (PDI56_01885) mreC 345788..346630 (+) 843 WP_031772030.1 rod shape-determining protein MreC -
  PDI56_RS01895 (PDI56_01890) mreD 346630..347160 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  PDI56_RS01900 (PDI56_01895) rplU 347396..347704 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  PDI56_RS01905 (PDI56_01900) - 347710..348030 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  PDI56_RS01910 (PDI56_01905) rpmA 348042..348326 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  PDI56_RS01915 (PDI56_01910) obgE 348680..349972 (+) 1293 WP_000496100.1 GTPase ObgE -
  PDI56_RS01920 (PDI56_01915) - 349985..350440 (+) 456 WP_000368902.1 ACT domain-containing protein -
  PDI56_RS01925 (PDI56_01920) ruvA 350454..351056 (+) 603 WP_000271550.1 Holliday junction branch migration protein RuvA Machinery gene
  PDI56_RS01930 (PDI56_01925) ruvB 351088..352092 (+) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  PDI56_RS01935 (PDI56_01930) queA 352094..353119 (+) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  PDI56_RS01940 (PDI56_01935) tgt 353142..354281 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  PDI56_RS01945 (PDI56_01940) yajC 354300..354560 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22281.50 Da        Isoelectric Point: 6.1244

>NTDB_id=704334 PDI56_RS01925 WP_000271550.1 350454..351056(+) (ruvA) [Staphylococcus aureus strain AF4004]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=704334 PDI56_RS01925 WP_000271550.1 350454..351056(+) (ruvA) [Staphylococcus aureus strain AF4004]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCGTACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66748

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

43.216

99.5

0.43