Detailed information NTG0704137

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: NIX96_RS15940
• Genome accession: NZ_CP100296
• Coordinates: 3372914..3374089 (+)
• Length: 391 a.a.
• NCBI ID: WP_161521125.1
• Uniprot ID: -
• Organism: Burkholderia glumae strain SL-2395S
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3367914..3379089

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NIX96_RS15915	hisC	3368348..3369415 (+)	1068	WP_035983605.1	histidinol-phosphate transaminase	-
NIX96_RS15920	-	3369480..3369749 (-)	270	WP_015877053.1	YfhL family 4Fe-4S dicluster ferredoxin	-
NIX96_RS15925	-	3370034..3371356 (+)	1323	WP_017424335.1	TIGR00366 family protein	-
NIX96_RS15930	coaD	3371501..3372001 (-)	501	WP_015877055.1	pantetheine-phosphate adenylyltransferase	-
NIX96_RS15935	rsmD	3372112..3372726 (-)	615	WP_043225699.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
NIX96_RS15940	pilA	3372914..3374089 (+)	1176	WP_161521125.1	signal recognition particle-docking protein FtsY	Machinery gene
NIX96_RS15945	ybiB	3374659..3375636 (+)	978	WP_015877058.1	DNA-binding protein YbiB	-
NIX96_RS15950	leuA	3376050..3377699 (+)	1650	WP_017923767.1	2-isopropylmalate synthase	-
NIX96_RS15955	-	3377897..3378283 (-)	387	WP_015877060.1	nuclear transport factor 2 family protein	-
NIX96_RS15960	-	3378323..3378892 (-)	570	WP_017923408.1	acyloxyacyl hydrolase	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 40790.76 Da
• Isoelectric Point: 5.4803

>NTDB_id=704137 NIX96_RS15940 WP_161521125.1 3372914..3374089(+) (pilA) [Burkholderia glumae strain SL-2395S]
MFSFFKRLIGSKADDASQDAPAADEQASAAHAPDAAGHAAAAASRPAPAPAHDAEPAASPAAPVPAAPAPAPAAVPAAPA
VEVVPPPAPEPAAKKSWIARLRSGLSKTSTSLTNVFVNTRIDDELYEELEAALLMSDAGIDATEYLLGALREKVRAERLS
DPLQVKAALRALLVDLLAPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQRFDQSVLLAAGDTFRAAAREQLAI
WGERNNVTVVQQESGDPAAVIFDAVGAARARKIDVVMADTAGRLPTQLHLMEELRKVKRVIGKAQSDAPHEVLLVIDANT
GQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFNAEEFADALLG

Nucleotide

• Length: 1176 bp

>NTDB_id=704137 NIX96_RS15940 WP_161521125.1 3372914..3374089(+) (pilA) [Burkholderia glumae strain SL-2395S]
ATGTTCAGCTTCTTCAAACGATTGATCGGCTCGAAGGCCGACGACGCGTCGCAGGACGCGCCGGCGGCCGACGAGCAAGC
CAGCGCGGCTCACGCGCCGGACGCGGCCGGGCATGCCGCCGCCGCGGCGAGCCGGCCGGCGCCCGCGCCGGCACACGACG
CCGAACCCGCCGCCAGCCCGGCTGCACCGGTGCCGGCCGCCCCCGCCCCCGCCCCTGCGGCCGTGCCCGCCGCCCCCGCC
GTCGAAGTCGTGCCGCCGCCCGCGCCTGAGCCGGCCGCGAAAAAATCCTGGATCGCACGACTACGCTCCGGGCTCTCGAA
GACGAGCACGAGCCTCACCAACGTGTTCGTCAATACCAGGATCGACGACGAACTCTACGAGGAGCTCGAAGCCGCGCTGC
TGATGTCCGATGCCGGCATCGACGCGACCGAATACCTGCTCGGCGCGCTGCGCGAGAAGGTGCGCGCCGAACGCCTGAGC
GATCCGCTGCAGGTGAAGGCCGCGCTGCGCGCGCTGCTCGTCGACCTGCTCGCGCCGCTCGAGAAATCGCTGATGCTGGG
CCGCGCCCAGCCGCTCGTGATGATGATCGCGGGCGTCAACGGAGCCGGCAAGACCACCAGCATCGGTAAGCTCGCCAAAC
ACCTGCAGCGCTTCGACCAATCGGTGCTGCTGGCCGCCGGCGACACGTTCCGCGCGGCCGCGCGCGAGCAGCTCGCGATC
TGGGGCGAGCGCAACAACGTGACCGTGGTGCAGCAGGAAAGCGGCGATCCGGCCGCCGTGATATTCGATGCGGTCGGCGC
CGCGCGCGCGCGCAAGATCGACGTGGTGATGGCCGACACCGCGGGCCGGTTGCCCACGCAGTTGCACCTGATGGAGGAAC
TGCGCAAGGTCAAGCGCGTGATCGGCAAGGCGCAGAGCGACGCGCCGCACGAGGTGCTGCTCGTGATCGACGCCAATACC
GGCCAGAACGCGCTCGCCCAGGTGAAGGCATTCGACGACGCGCTGGGCCTGACCGGGCTCATCGTCACCAAGCTCGACGG
CACCGCGAAGGGCGGCATTCTCGCCGCGATCGCGCGGCAGCGGCCGATACCCGTCTACTTCATCGGCGTCGGCGAGAAGG
TCGAGGACTTGCAGCCGTTCAACGCCGAGGAATTCGCCGACGCGCTGCTCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (192-391)

• SRP54-type protein, helical bundle domain (SRP54_N) (110-170)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.537	100	0.558