Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NKT35_RS06900 Genome accession   NZ_CP100128
Coordinates   1475429..1476751 (+) Length   440 a.a.
NCBI ID   WP_254300149.1    Uniprot ID   -
Organism   Chromobacterium sp. IIBBL 290-4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1470429..1481751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKT35_RS06885 (NKT35_06885) - 1470974..1471435 (-) 462 WP_254300143.1 GNAT family N-acetyltransferase -
  NKT35_RS06890 (NKT35_06890) parC 1471532..1473883 (+) 2352 WP_254300145.1 DNA topoisomerase IV subunit A -
  NKT35_RS06895 (NKT35_06895) - 1473883..1475436 (+) 1554 WP_254300147.1 nitrogen regulation protein NR(II) -
  NKT35_RS06900 (NKT35_06900) pilR 1475429..1476751 (+) 1323 WP_254300149.1 sigma-54 dependent transcriptional regulator Regulator
  NKT35_RS06905 (NKT35_06905) - 1476864..1477364 (+) 501 WP_254300151.1 hypothetical protein -
  NKT35_RS06910 (NKT35_06910) - 1477383..1479110 (+) 1728 WP_254300153.1 hybrid sensor histidine kinase/response regulator -
  NKT35_RS06915 (NKT35_06915) - 1479070..1479909 (-) 840 WP_254300155.1 class I SAM-dependent methyltransferase -
  NKT35_RS06920 (NKT35_06920) - 1479970..1480215 (-) 246 WP_254300158.1 hypothetical protein -
  NKT35_RS06925 (NKT35_06925) pilT 1480236..1481273 (+) 1038 WP_254300160.1 type IV pilus twitching motility protein PilT Machinery gene

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 48137.17 Da        Isoelectric Point: 6.1964

>NTDB_id=703707 NKT35_RS06900 WP_254300149.1 1475429..1476751(+) (pilR) [Chromobacterium sp. IIBBL 290-4]
MTKSAHRVLIVDDEPDIRELLELTLLKMGLQPVAAGSVGEARAALQAGSFDLALTDMRLPDGEGLEVVRHIAEQGLDLPI
AVLTAFGSADNAVQAMKAGAFDYLQKPVSLAQLRSLVKSALKVDAPAAKPSAQKRLLGDSPAIQEVLRRVDKLARSQAAV
YIRGESGTGKEQAARLIHETGPRAGRPFVAVNCGAIPENLMESEFFGYRKGAFTGADSERDGFFQQAQGGTLFLDEVADL
PLAMQVKLLRAIQEKTVRKLGASQEEAADARIICATHQDLAALAEQGRFRQDLFYRLNVLPLQMPPLRELREDIPLLAER
LLARFSDASAPARLAPDALNALQDYAFPGNFRELENILERAVALASSPTLRAEDLQLSPPLRDIAPPDGGTDLQQYLDQL
ERDAIVKALETTRYNRTQAAKRLGVTFRSLRYRMERLGIK

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=703707 NKT35_RS06900 WP_254300149.1 1475429..1476751(+) (pilR) [Chromobacterium sp. IIBBL 290-4]
ATGACTAAGTCCGCCCACCGCGTCCTCATCGTCGACGACGAGCCCGACATCCGCGAGTTGCTGGAGCTGACGCTGCTGAA
AATGGGCTTGCAGCCGGTGGCTGCGGGCAGCGTAGGCGAGGCGCGCGCCGCGCTGCAGGCCGGCTCCTTCGACCTGGCGC
TGACCGATATGCGGCTGCCGGACGGCGAGGGGCTGGAGGTGGTGCGCCATATCGCCGAGCAAGGCCTGGACCTGCCCATC
GCCGTGCTCACCGCCTTCGGCAGCGCCGACAACGCGGTGCAGGCGATGAAAGCCGGCGCCTTCGATTATCTGCAAAAGCC
GGTCAGCCTGGCCCAATTGCGCAGCCTGGTGAAATCGGCGCTGAAAGTGGACGCGCCCGCCGCCAAACCTTCCGCTCAGA
AGAGGCTGCTGGGCGACTCGCCGGCAATACAAGAAGTGTTGCGGCGGGTGGACAAGCTGGCGCGCAGCCAGGCCGCCGTC
TATATCCGCGGCGAATCCGGCACCGGCAAGGAACAGGCGGCGCGGCTGATCCACGAGACCGGTCCGCGCGCCGGCAGACC
CTTCGTCGCGGTCAATTGCGGCGCCATCCCGGAAAACCTGATGGAGAGCGAATTCTTCGGCTACCGCAAAGGCGCCTTCA
CCGGCGCGGACAGCGAGCGGGACGGTTTCTTCCAGCAGGCCCAGGGGGGCACGCTGTTTCTGGACGAGGTGGCCGATCTG
CCGCTGGCCATGCAAGTGAAGCTGCTGCGCGCCATTCAGGAAAAAACCGTGCGCAAGCTGGGCGCCAGCCAGGAAGAGGC
GGCGGACGCGCGCATCATCTGCGCCACCCACCAGGACCTGGCGGCTTTGGCCGAGCAAGGGCGCTTTCGCCAGGATCTGT
TTTACCGGCTCAACGTGCTGCCGCTGCAGATGCCGCCGCTGCGCGAACTGCGCGAGGACATCCCGCTGCTGGCCGAACGC
CTGCTGGCGCGCTTCTCCGACGCCTCCGCCCCGGCGCGGCTGGCGCCGGATGCGCTCAATGCCTTGCAGGATTATGCCTT
CCCCGGCAATTTCCGCGAGCTGGAAAATATTCTGGAACGCGCCGTCGCGCTGGCAAGCTCCCCCACGCTGCGCGCCGAAG
ACCTGCAATTGTCGCCGCCCCTTCGCGACATCGCGCCGCCCGATGGCGGAACCGACCTGCAGCAATATTTGGACCAGCTG
GAGCGAGACGCCATCGTCAAAGCGCTGGAAACCACCCGCTACAACCGCACCCAGGCCGCCAAACGGCTGGGCGTGACCTT
CCGCTCGCTGCGCTACCGCATGGAGCGGCTGGGCATAAAATAG

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(397-436)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.652

100

0.593
  pilR Acinetobacter baumannii strain A118

44.541

100

0.464
  luxO Vibrio cholerae strain A1552

38.81

95.455

0.37