Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   VRUMOI_RS01320 Genome accession   NZ_AP018685
Coordinates   296127..296759 (-) Length   210 a.a.
NCBI ID   WP_089140000.1    Uniprot ID   -
Organism   Vibrio rumoiensis strain FERM P-14531     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 291127..301759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRUMOI_RS01290 - 291335..291739 (-) 405 WP_089139994.1 hypothetical protein -
  VRUMOI_RS01295 - 291899..292765 (-) 867 WP_089139995.1 YicC/YloC family endoribonuclease -
  VRUMOI_RS01300 rph 292913..293641 (+) 729 WP_089139996.1 ribonuclease PH -
  VRUMOI_RS01305 pyrE 293771..294412 (+) 642 WP_089139997.1 orotate phosphoribosyltransferase -
  VRUMOI_RS01310 - 294641..295846 (+) 1206 WP_089139998.1 aromatic amino acid transport family protein -
  VRUMOI_RS01320 crp 296127..296759 (-) 633 WP_089140000.1 cAMP-activated global transcriptional regulator CRP Regulator
  VRUMOI_RS01325 - 297002..297871 (-) 870 WP_089140001.1 phosphoribulokinase -
  VRUMOI_RS01330 - 297963..298178 (-) 216 WP_089140002.1 YheU family protein -
  VRUMOI_RS01335 - 298459..298923 (-) 465 WP_089140003.1 TIGR02444 family protein -
  VRUMOI_RS01340 - 298920..300827 (-) 1908 WP_089140004.1 ABC transporter ATP-binding protein -
  VRUMOI_RS01345 kefG 301090..301686 (+) 597 WP_089140005.1 glutathione-regulated potassium-efflux system ancillary protein KefG -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23650.55 Da        Isoelectric Point: 8.6733

>NTDB_id=70354 VRUMOI_RS01320 WP_089140000.1 296127..296759(-) (crp) [Vibrio rumoiensis strain FERM P-14531]
MVLGKPQTDPTLKWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMAKRLQITSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=70354 VRUMOI_RS01320 WP_089140000.1 296127..296759(-) (crp) [Vibrio rumoiensis strain FERM P-14531]
ATGGTTCTAGGTAAACCTCAAACTGACCCAACATTAAAGTGGTTTCTATCGCATTGTCACATCCATAAGTACCCATCAAA
AAGTACTTTGATTCACGCAGGCGAGAAAGCAGAAACCCTTTATTACATCGTAAAAGGGTCCGTGGCTGTATTAATCAAGG
ATGAAGAAGGCAAAGAAATGATTTTGTCTTACTTGAACCAAGGTGACTTCATTGGTGAATTAGGCCTATTTGAAGAAGAC
CAAGAGCGTACTGCTTGGGTTCGAGCCAAATCACCTTGTGAAGTTGCTGAAATCTCATTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGATATTTTGATGCGTCTTTCTGCACAAATGGCAAAACGTCTGCAAATCACTAGCCAAAAAGTAGGTG
ACTTAGCATTCCTAGACGTAACCGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAACCTGATGCAATGACGCAC
CCAGACGGCATGCAAATTAAGATCACTCGTCAAGAGATTGGTCAAATTGTAGGTTGTTCACGTGAAACGGTTGGCCGTAT
CTTGAAGATGCTAGAAGAGCAAAACTTGATTTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACGCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

96.667

100

0.967
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment