Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VCASEI_RS12765 Genome accession   NZ_AP018680
Coordinates   2729476..2730999 (-) Length   507 a.a.
NCBI ID   WP_089110353.1    Uniprot ID   -
Organism   Vibrio casei strain DSM 22364     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2724476..2735999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCASEI_RS12740 - 2724554..2725339 (-) 786 WP_086959150.1 sporulation protein -
  VCASEI_RS19785 - 2725547..2725672 (+) 126 WP_258954845.1 hypothetical protein -
  VCASEI_RS12745 - 2725783..2726049 (+) 267 WP_086959148.1 YihD family protein -
  VCASEI_RS12750 ccoG 2726265..2727647 (+) 1383 WP_089110351.1 cytochrome c oxidase accessory protein CcoG -
  VCASEI_RS12755 - 2727755..2728759 (+) 1005 WP_170924547.1 serine/threonine protein kinase -
  VCASEI_RS12760 - 2728793..2729392 (+) 600 WP_089110352.1 thiol:disulfide interchange protein DsbA/DsbL -
  VCASEI_RS12765 comM 2729476..2730999 (-) 1524 WP_089110353.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VCASEI_RS12770 ilvG 2731439..2733085 (+) 1647 WP_086959142.1 acetolactate synthase 2 catalytic subunit -
  VCASEI_RS12775 ilvM 2733085..2733339 (+) 255 WP_086959140.1 acetolactate synthase 2 small subunit -
  VCASEI_RS12780 - 2733370..2734308 (+) 939 WP_086959138.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55337.58 Da        Isoelectric Point: 7.0820

>NTDB_id=70343 VCASEI_RS12765 WP_089110353.1 2729476..2730999(-) (comM) [Vibrio casei strain DSM 22364]
MELAIIHSRACVGVEAPEVTVEVHISNGMPGFSLVGLPETTVKESKDRVRSAILNSNFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASQQIAINKLEHYEFVGELALSGELRRVKGVLPAALACKKQQRCLVVPNDNGDQAALVGEGLHKSAATL
LEVCADLCGQQNLSLFIAPHQPEVKTNERDLQDIIGQQQGKRALEIAAAGSHNLLFLGPPGTGKTMLASRLCDLLPEMEN
DEALESASVASLTELDINHHNWKTRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGHYEGSQSRTNPQLILRYLSRLSGPLLDRFDMSIEIPALPKGMLSQGGER
GEPTEVVKARVWQARQVMLKRSGKVNALLGSREIEHYCQLEKQDAEFLEHALHQLGLSVRAYHRILKVARTIADLSGCEN
IQKPHLAEALGYRNMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=70343 VCASEI_RS12765 WP_089110353.1 2729476..2730999(-) (comM) [Vibrio casei strain DSM 22364]
ATGGAATTGGCAATCATACATAGCCGAGCGTGTGTTGGGGTGGAAGCTCCTGAAGTGACCGTTGAAGTGCATATTAGTAA
CGGCATGCCGGGGTTCTCTTTGGTGGGTTTACCAGAGACGACGGTCAAAGAATCTAAAGATCGCGTTCGCAGCGCCATTT
TAAATTCTAATTTTGAATTTCCGGCTAAACGCATCACTGTCAATTTGGCGCCTGCTGATTTACCCAAAGAAGGGGGGCGT
TTTGACTTACCAATAGCATTAGGGATTTTGGCTGCTTCTCAGCAAATTGCGATCAATAAGTTAGAGCATTATGAGTTTGT
TGGGGAGCTTGCATTATCGGGAGAATTGCGCCGTGTGAAAGGCGTATTGCCTGCCGCATTGGCGTGTAAAAAGCAGCAAC
GATGCTTGGTGGTGCCGAATGATAATGGCGATCAAGCGGCGTTGGTTGGGGAAGGGTTACATAAATCAGCCGCGACGTTA
TTGGAAGTTTGTGCGGATTTATGTGGTCAACAAAACCTAAGCCTTTTTATTGCTCCCCACCAACCAGAAGTGAAAACCAA
CGAACGAGATCTTCAAGATATCATTGGGCAGCAACAAGGCAAGCGTGCGCTTGAAATCGCCGCCGCAGGTTCGCATAATT
TACTGTTTCTCGGGCCTCCCGGTACTGGTAAAACAATGTTGGCGTCTCGGTTGTGCGATTTACTCCCCGAGATGGAAAAT
GATGAAGCATTAGAAAGCGCATCGGTAGCCTCACTGACAGAGTTAGATATTAATCATCATAATTGGAAAACCCGGCCTTT
TCGTGCACCACATCACTCCAGTTCAATGGCGGCATTGGTAGGGGGTGGTTCGATCCCAAGGCCGGGAGAGATATCATTGG
CTCATAATGGATTGTTGTTTTTAGATGAGATGCCAGAATTTGATCGAAAAGTACTCGACTCTTTACGTGAGCCATTAGAG
TCTGGTGAAATCATTATCTCGCGCGCTGCAGGTAAAACTCGTTTTCCGGCACGTTTTCAATTGGTGGGCGCGTTAAATCC
TAGCCCAACGGGGCATTATGAAGGGTCTCAGTCTCGTACCAATCCTCAACTGATCTTACGGTATTTAAGCCGTTTATCTG
GCCCGTTATTAGATCGATTTGATATGTCGATAGAAATTCCCGCGTTACCTAAAGGGATGCTATCTCAAGGTGGAGAGCGA
GGTGAGCCGACTGAGGTGGTTAAAGCGCGTGTATGGCAAGCCAGACAAGTAATGTTAAAACGCAGCGGTAAGGTGAATGC
ATTATTGGGGAGCAGAGAAATTGAACATTACTGTCAACTAGAAAAGCAAGATGCGGAGTTTTTAGAGCATGCCTTGCATC
AGCTTGGATTGTCAGTGAGAGCGTATCACCGTATTTTAAAAGTAGCGCGTACTATTGCCGATTTATCTGGTTGTGAAAAC
ATCCAAAAACCCCACTTAGCGGAAGCATTAGGTTATCGAAATATGGATCGTTTATTGAAGCAACTTACCGCACAAGCGGT
GTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

83.037

100

0.83
  comM Vibrio cholerae strain A1552

82.051

100

0.821
  comM Glaesserella parasuis strain SC1401

64.327

100

0.651
  comM Haemophilus influenzae Rd KW20

64.497

100

0.645
  comM Legionella pneumophila str. Paris

50

98.225

0.491
  comM Legionella pneumophila strain ERS1305867

50

98.225

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.774

100

0.444

Multiple sequence alignment