Detailed information NTG0070340

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VCASEI_RS12070
• Genome accession: NZ_AP018680
• Coordinates: 2580696..2581700 (+)
• Length: 334 a.a.
• NCBI ID: WP_086960417.1
• Uniprot ID: -
• Organism: Vibrio casei strain DSM 22364
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2575696..2586700

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VCASEI_RS12050	metJ	2575907..2576224 (+)	318	WP_086960414.1	met regulon transcriptional regulator MetJ	-
VCASEI_RS12055	-	2576340..2577596 (-)	1257	WP_089110411.1	malic enzyme-like NAD(P)-binding protein	-
VCASEI_RS12060	rpmE	2577757..2577975 (-)	219	WP_017025369.1	50S ribosomal protein L31	-
VCASEI_RS12065	priA	2578251..2580452 (+)	2202	WP_086960416.1	primosomal protein N'	-
VCASEI_RS12070	cytR	2580696..2581700 (+)	1005	WP_086960417.1	DNA-binding transcriptional regulator CytR	Regulator
VCASEI_RS12075	-	2581860..2582435 (+)	576	WP_086960418.1	SPOR domain-containing protein	-
VCASEI_RS12080	hslV	2582643..2583161 (+)	519	WP_086960419.1	ATP-dependent protease subunit HslV	-
VCASEI_RS12085	hslU	2583273..2584613 (+)	1341	WP_086960420.1	HslU--HslV peptidase ATPase subunit	-
VCASEI_RS12090	-	2584730..2585641 (+)	912	WP_086960421.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
VCASEI_RS12095	rraA	2585768..2586292 (+)	525	WP_086960422.1	ribonuclease E activity regulator RraA	-
VCASEI_RS12100	zapB	2586392..2586634 (-)	243	WP_086960423.1	cell division protein ZapB	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36939.32 Da
• Isoelectric Point: 5.4235

>NTDB_id=70340 VCASEI_RS12070 WP_086960417.1 2580696..2581700(+) (cytR) [Vibrio casei strain DSM 22364]
MATMKEVAQLAGVSTATVSRALMNPEKVSISTRKRVEDAVLESGYSPNSLARNLRRNESKTIIVIVPDICDPYFTEIIRG
IEDTAAEYNYLVLLGDSGQQLKRESTFVNLVFTKQADGMLLLGTDIPFDVSKPEQKNLPPIVMACEYAPELELPTVHIDN
LTAAFDVVNYLTQMGHKRIAEMSGPTEATLCHFRHQGYQQALRRAGIEMNPAYQAFGDFTFESGVQAATKLLSQPEPPTA
IFCHNDSMAIGAIQQAKKQGFRIPQDLSIVGFDDIQFSQYCDPPLTTIAQPRYEIGKQSMLMLLEMLKGREVQAGSRLLE
ANLVIRNSAAPPHS

Nucleotide

• Length: 1005 bp

>NTDB_id=70340 VCASEI_RS12070 WP_086960417.1 2580696..2581700(+) (cytR) [Vibrio casei strain DSM 22364]
ATGGCGACAATGAAGGAAGTTGCCCAATTAGCTGGGGTATCAACGGCAACGGTATCAAGAGCCTTGATGAATCCGGAAAA
AGTATCGATCTCGACTCGAAAGCGAGTGGAAGATGCGGTATTAGAATCGGGCTATTCCCCCAACTCATTGGCTCGTAATT
TACGACGTAATGAATCCAAAACCATCATTGTTATCGTACCTGATATTTGCGATCCTTATTTTACTGAAATTATTCGTGGT
ATTGAAGACACCGCCGCCGAGTATAATTACCTAGTGTTACTGGGTGATAGTGGCCAACAACTCAAACGTGAAAGTACCTT
TGTTAACCTCGTTTTTACCAAGCAAGCTGATGGTATGTTACTGCTTGGTACCGATATTCCGTTTGATGTTAGTAAACCCG
AACAAAAAAACTTACCCCCCATTGTCATGGCTTGTGAATACGCACCAGAGCTTGAATTACCCACGGTGCATATCGATAAC
TTAACCGCTGCTTTTGATGTGGTTAATTATCTCACTCAGATGGGTCATAAACGCATTGCGGAAATGTCTGGCCCCACAGA
GGCCACATTGTGTCACTTCCGTCACCAAGGTTACCAACAAGCACTAAGACGCGCAGGCATTGAAATGAACCCAGCTTATC
AAGCCTTTGGTGATTTTACGTTTGAATCAGGCGTTCAAGCCGCCACTAAATTGCTGTCACAACCAGAGCCTCCCACTGCC
ATTTTTTGTCATAACGACAGCATGGCTATTGGTGCCATTCAACAGGCGAAAAAACAAGGTTTCCGTATTCCTCAAGACCT
ATCTATCGTCGGCTTTGATGATATTCAGTTTTCGCAATATTGCGATCCCCCTTTGACAACCATTGCACAACCAAGATATG
AAATTGGCAAACAATCTATGTTAATGCTATTGGAAATGTTGAAAGGCAGAGAAGTACAGGCCGGTTCTCGTTTGTTAGAA
GCCAATTTAGTCATTCGCAATAGCGCCGCACCACCTCACTCATAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	81.325	99.401	0.808
cytR	Vibrio parahaemolyticus RIMD 2210633	79.58	99.701	0.793