Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   VCASEI_RS11795 Genome accession   NZ_AP018680
Coordinates   2512802..2513434 (+) Length   210 a.a.
NCBI ID   WP_017025416.1    Uniprot ID   A0A1E5E6X1
Organism   Vibrio casei strain DSM 22364     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2507802..2518434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCASEI_RS11770 kefG 2508027..2508614 (-) 588 WP_089110433.1 glutathione-regulated potassium-efflux system ancillary protein KefG -
  VCASEI_RS11775 - 2508849..2510756 (+) 1908 WP_086960365.1 ABC transporter ATP-binding protein -
  VCASEI_RS11780 - 2510758..2511225 (+) 468 WP_089110432.1 TIGR02444 family protein -
  VCASEI_RS11785 - 2511344..2511559 (+) 216 WP_089110431.1 YheU family protein -
  VCASEI_RS11790 - 2511691..2512560 (+) 870 WP_089110430.1 phosphoribulokinase -
  VCASEI_RS11795 crp 2512802..2513434 (+) 633 WP_017025416.1 cAMP-activated global transcriptional regulator CRP Regulator
  VCASEI_RS11800 - 2513574..2514779 (-) 1206 WP_089110429.1 aromatic amino acid transport family protein -
  VCASEI_RS11805 pyrE 2514999..2515640 (-) 642 WP_086960370.1 orotate phosphoribosyltransferase -
  VCASEI_RS11810 rph 2515770..2516498 (-) 729 WP_089110428.1 ribonuclease PH -
  VCASEI_RS11815 - 2516634..2517500 (+) 867 WP_086960372.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23651.49 Da        Isoelectric Point: 7.8383

>NTDB_id=70334 VCASEI_RS11795 WP_017025416.1 2512802..2513434(+) (crp) [Vibrio casei strain DSM 22364]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMAKRLQITSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=70334 VCASEI_RS11795 WP_017025416.1 2512802..2513434(+) (crp) [Vibrio casei strain DSM 22364]
ATGGTTCTAGGTAAACCTCAAACTGACCCAACATTAGAGTGGTTTCTATCGCATTGTCACATCCATAAGTACCCATCAAA
AAGTACTTTGATTCACGCTGGCGAGAAAGCAGAAACCCTTTATTACATCGTAAAAGGGTCTGTGGCAGTATTAATCAAGG
ATGAAGAAGGCAAAGAAATGATTTTGTCTTACTTGAACCAAGGTGACTTCATTGGTGAATTAGGCCTATTTGAAGAAGAC
CAAGAGCGTACCGCTTGGGTTCGAGCCAAATCTCCTTGTGAAGTGGCTGAAATTTCATTTAAGAAATTCCGCCAACTTAT
CCAAGTTAACCCTGATATTTTGATGCGTCTTTCTGCCCAAATGGCAAAACGTCTGCAAATCACTAGCCAAAAAGTTGGTG
ACTTAGCATTCCTAGACGTGACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAACCAGATGCAATGACGCAC
CCAGATGGCATGCAAATTAAGATCACTCGTCAAGAGATCGGTCAGATTGTTGGCTGTTCACGTGAAACGGTTGGTCGCAT
CTTAAAAATGCTAGAAGAGCAAAATTTGATTTCAGCCCACGGTAAAACCATCGTGGTTTACGGTACACGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5E6X1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment