Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PCS80_RS03600 Genome accession   NZ_CP115324
Coordinates   681857..682513 (-) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain CUVET17-1136     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 676857..687513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS80_RS03560 (PCS80_03555) - 677199..677381 (+) 183 WP_000916334.1 hypothetical protein -
  PCS80_RS03565 (PCS80_03565) - 677591..677854 (+) 264 WP_000833838.1 DUF4224 domain-containing protein -
  PCS80_RS03570 (PCS80_03570) - 677823..678839 (+) 1017 WP_001531780.1 tyrosine-type recombinase/integrase -
  PCS80_RS03590 (PCS80_03590) pgsA 679423..679971 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PCS80_RS03595 (PCS80_03595) uvrC 680028..681860 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  PCS80_RS03600 (PCS80_03600) letA 681857..682513 (-) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PCS80_RS03605 (PCS80_03605) yecU 682809..682985 (+) 177 WP_001307856.1 protein YecU -
  PCS80_RS03610 (PCS80_03610) yecF 682972..683196 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  PCS80_RS03615 (PCS80_03615) sdiA 683264..683986 (-) 723 WP_001154255.1 transcriptional regulator SdiA -
  PCS80_RS03620 (PCS80_03620) tcyN 684216..684968 (-) 753 WP_001273000.1 L-cystine ABC transporter ATP-binding protein TcyN -
  PCS80_RS03625 (PCS80_03625) tcyL 684965..685633 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  PCS80_RS03630 (PCS80_03630) dcyD 685648..686634 (-) 987 WP_001128232.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=703246 PCS80_RS03600 WP_000611328.1 681857..682513(-) (letA) [Escherichia coli strain CUVET17-1136]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=703246 PCS80_RS03600 WP_000611328.1 681857..682513(-) (letA) [Escherichia coli strain CUVET17-1136]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAATGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGAGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482