Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NIH92_RS08740 Genome accession   NZ_CP099989
Coordinates   1815394..1816212 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain KBN10P04593     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1810394..1821212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIH92_RS08705 (NIH92_08705) - 1810977..1811106 (-) 130 Protein_1681 hypothetical protein -
  NIH92_RS08710 (NIH92_08710) rpoZ 1811145..1811423 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NIH92_RS08715 (NIH92_08715) gmk 1811496..1812125 (-) 630 WP_000015937.1 guanylate kinase -
  NIH92_RS08720 (NIH92_08720) ispH 1812248..1813198 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NIH92_RS08725 (NIH92_08725) fimU 1813368..1813841 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  NIH92_RS08730 (NIH92_08730) pilV 1813835..1814395 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  NIH92_RS08735 (NIH92_08735) pilW 1814396..1815397 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  NIH92_RS08740 (NIH92_08740) pilX 1815394..1816212 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NIH92_RS08745 (NIH92_08745) pilY1 1816224..1820078 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  NIH92_RS08750 (NIH92_08750) pilY2 1820091..1820573 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  NIH92_RS08755 (NIH92_08755) pilE 1820570..1820995 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=703246 NIH92_RS08740 WP_000149374.1 1815394..1816212(+) (pilX) [Acinetobacter baumannii strain KBN10P04593]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=703246 NIH92_RS08740 WP_000149374.1 1815394..1816212(+) (pilX) [Acinetobacter baumannii strain KBN10P04593]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993