Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   NIH92_RS08735 Genome accession   NZ_CP099989
Coordinates   1814396..1815397 (+) Length   333 a.a.
NCBI ID   WP_000079200.1    Uniprot ID   A0A9P3CZV1
Organism   Acinetobacter baumannii strain KBN10P04593     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1809396..1820397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIH92_RS08705 (NIH92_08705) - 1810977..1811106 (-) 130 Protein_1681 hypothetical protein -
  NIH92_RS08710 (NIH92_08710) rpoZ 1811145..1811423 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NIH92_RS08715 (NIH92_08715) gmk 1811496..1812125 (-) 630 WP_000015937.1 guanylate kinase -
  NIH92_RS08720 (NIH92_08720) ispH 1812248..1813198 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NIH92_RS08725 (NIH92_08725) fimU 1813368..1813841 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  NIH92_RS08730 (NIH92_08730) pilV 1813835..1814395 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  NIH92_RS08735 (NIH92_08735) pilW 1814396..1815397 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  NIH92_RS08740 (NIH92_08740) pilX 1815394..1816212 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NIH92_RS08745 (NIH92_08745) pilY1 1816224..1820078 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35829.53 Da        Isoelectric Point: 5.7207

>NTDB_id=703245 NIH92_RS08735 WP_000079200.1 1814396..1815397(+) (pilW) [Acinetobacter baumannii strain KBN10P04593]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNYWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=703245 NIH92_RS08735 WP_000079200.1 1814396..1815397(+) (pilW) [Acinetobacter baumannii strain KBN10P04593]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACTACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.7

100

0.997