Detailed information NTG0070301

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: V060002_RS17140
• Genome accession: NZ_AP018677
• Coordinates: 3602613..3603620 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain V060002
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3597613..3608620

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V060002_RS17130 (V060002_03251)	cysM	3598777..3599664 (+)	888	WP_001279365.1	cysteine synthase CysM	-
V060002_RS17135 (V060002_03252)	mutS	3599932..3602520 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
V060002_RS17140 (V060002_03253)	rpoS	3602613..3603620 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
V060002_RS17145 (V060002_03254)	nlpD	3603694..3604629 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
V060002_RS17150 (V060002_03255)	-	3604629..3605255 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
V060002_RS17155 (V060002_03256)	surE	3605248..3606000 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
V060002_RS17160 (V060002_03257)	truD	3606002..3607087 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
V060002_RS17165 (V060002_03258)	ispF	3607117..3607593 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
V060002_RS17170 (V060002_03259)	ispD	3607590..3608288 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
V060002_RS17175 (V060002_03260)	ftsB	3608285..3608569 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=70301 V060002_RS17140 WP_000116737.1 3602613..3603620(-) (rpoS) [Vibrio cholerae strain V060002]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=70301 V060002_RS17140 WP_000116737.1 3602613..3603620(-) (rpoS) [Vibrio cholerae strain V060002]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1