Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   NI375_RS13585 Genome accession   NZ_CP099956
Coordinates   2956622..2957266 (+) Length   214 a.a.
NCBI ID   WP_005381237.1    Uniprot ID   A0A2I3CB98
Organism   Vibrio alginolyticus strain Isc15A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2929729..2955631 2956622..2957266 flank 991


Gene organization within MGE regions


Location: 2929729..2957266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI375_RS13465 (NI375_13665) - 2929729..2931453 (-) 1725 WP_005381188.1 GspE/PulE family protein -
  NI375_RS13470 (NI375_13670) - 2931450..2932544 (-) 1095 WP_213874924.1 lipopolysaccharide assembly protein LapB -
  NI375_RS13475 (NI375_13675) - 2932541..2933386 (-) 846 WP_033907419.1 ExeA family protein -
  NI375_RS13480 (NI375_13680) mshL 2933431..2935071 (-) 1641 WP_005388471.1 pilus (MSHA type) biogenesis protein MshL -
  NI375_RS13485 (NI375_13685) - 2935092..2935424 (-) 333 WP_005381196.1 hypothetical protein -
  NI375_RS13490 (NI375_13690) gspM 2935417..2936067 (-) 651 WP_005381197.1 type II secretion system protein GspM -
  NI375_RS13495 (NI375_13695) - 2936064..2937509 (-) 1446 WP_054579427.1 hypothetical protein -
  NI375_RS13500 (NI375_13700) csrD 2937521..2939530 (-) 2010 WP_191116183.1 RNase E specificity factor CsrD -
  NI375_RS13505 (NI375_13705) - 2939978..2940469 (-) 492 WP_308386890.1 hypothetical protein -
  NI375_RS13510 (NI375_13710) - 2940466..2940798 (-) 333 WP_085344272.1 STAS-like domain-containing protein -
  NI375_RS13515 (NI375_13715) - 2940791..2941810 (-) 1020 WP_085344271.1 hypothetical protein -
  NI375_RS13520 (NI375_13720) - 2942160..2943344 (-) 1185 WP_085344270.1 hypothetical protein -
  NI375_RS13525 (NI375_13725) - 2943526..2944749 (+) 1224 WP_254048135.1 ParB/RepB/Spo0J family partition protein -
  NI375_RS13530 (NI375_13730) - 2945112..2945300 (+) 189 WP_025621703.1 hypothetical protein -
  NI375_RS13535 (NI375_13735) - 2945656..2946372 (-) 717 WP_308386891.1 class I SAM-dependent methyltransferase -
  NI375_RS13540 (NI375_13740) - 2946729..2947610 (-) 882 WP_308386892.1 DUF4238 domain-containing protein -
  NI375_RS13545 (NI375_13750) - 2947754..2948446 (-) 693 WP_025626477.1 FRG domain-containing protein -
  NI375_RS13550 (NI375_13755) - 2948676..2949035 (+) 360 Protein_2618 regulator -
  NI375_RS13555 (NI375_13760) - 2949817..2949954 (-) 138 WP_154217309.1 hypothetical protein -
  NI375_RS13560 (NI375_13765) - 2949962..2950381 (-) 420 WP_085344681.1 hypothetical protein -
  NI375_RS13565 (NI375_13770) - 2950387..2952756 (-) 2370 WP_308386893.1 integrase -
  NI375_RS13570 (NI375_13775) - 2952749..2954302 (-) 1554 WP_085344679.1 site-specific integrase -
  NI375_RS13575 (NI375_13780) - 2954309..2955631 (-) 1323 WP_085344678.1 site-specific integrase -
  NI375_RS13580 (NI375_13785) ssb 2955805..2956344 (-) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene
  NI375_RS13585 (NI375_13790) qstR 2956622..2957266 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24397.32 Da        Isoelectric Point: 9.8721

>NTDB_id=702944 NI375_RS13585 WP_005381237.1 2956622..2957266(+) (qstR) [Vibrio alginolyticus strain Isc15A]
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=702944 NI375_RS13585 WP_005381237.1 2956622..2957266(+) (qstR) [Vibrio alginolyticus strain Isc15A]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACGGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAGGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CB98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.86

100

0.949
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.869

100

0.519