Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PCP76_RS16120 Genome accession   NZ_CP115297
Coordinates   3427787..3428116 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 135     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3422787..3433116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP76_RS16105 (PCP76_16090) uvrB 3424174..3426186 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  PCP76_RS16110 (PCP76_16095) - 3426374..3427570 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  PCP76_RS16120 (PCP76_16105) comEA/comE1 3427787..3428116 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  PCP76_RS16125 (PCP76_16110) - 3428307..3430304 (-) 1998 WP_073649874.1 polysaccharide biosynthesis protein -
  PCP76_RS16130 (PCP76_16115) - 3430855..3431961 (-) 1107 Protein_3174 IS3 family transposase -
  PCP76_RS16135 (PCP76_16120) - 3432028..3433047 (-) 1020 WP_073649876.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=702820 PCP76_RS16120 WP_003091430.1 3427787..3428116(-) (comEA/comE1) [Pseudomonas aeruginosa strain 135]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=702820 PCP76_RS16120 WP_003091430.1 3427787..3428116(-) (comEA/comE1) [Pseudomonas aeruginosa strain 135]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAACAGGTCAATATCAACACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385