Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   NI392_RS21840 Genome accession   NZ_CP099950
Coordinates   2944988..2945632 (+) Length   214 a.a.
NCBI ID   WP_005381237.1    Uniprot ID   A0A2I3CB98
Organism   Vibrio alginolyticus strain Isc1B     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2939988..2950632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI392_RS21825 (NI392_21985) - 2940462..2941907 (-) 1446 WP_005387799.1 hypothetical protein -
  NI392_RS21830 (NI392_21990) csrD 2941919..2943928 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  NI392_RS21835 (NI392_21995) ssb 2944171..2944710 (-) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  NI392_RS21840 (NI392_22000) qstR 2944988..2945632 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  NI392_RS21845 (NI392_22005) galU 2945792..2946664 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NI392_RS21850 (NI392_22010) uvrA 2946814..2949636 (+) 2823 WP_104975640.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24397.32 Da        Isoelectric Point: 9.8721

>NTDB_id=702814 NI392_RS21840 WP_005381237.1 2944988..2945632(+) (qstR) [Vibrio alginolyticus strain Isc1B]
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=702814 NI392_RS21840 WP_005381237.1 2944988..2945632(+) (qstR) [Vibrio alginolyticus strain Isc1B]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAATTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACAGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAAGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CB98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.86

100

0.949
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.869

100

0.519