Detailed information NTG0702723

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NI380_RS03200
• Genome accession: NZ_CP099934
• Coordinates: 654115..654984 (-)
• Length: 289 a.a.
• NCBI ID: WP_308386333.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain BM26A
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 649115..659984

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI380_RS03165 (NI380_03160)	rpsP	650099..650347 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
NI380_RS03170 (NI380_03165)	rimM	650376..650924 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
NI380_RS03175 (NI380_03170)	trmD	650952..651695 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
NI380_RS03180 (NI380_03175)	rplS	651737..652090 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
NI380_RS03185 (NI380_03180)	yacG	652469..652663 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
NI380_RS03190 (NI380_03185)	zapD	652732..653472 (-)	741	WP_015297254.1	cell division protein ZapD	-
NI380_RS03195 (NI380_03190)	coaE	653500..654114 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
NI380_RS03200 (NI380_03195)	pilD	654115..654984 (-)	870	WP_308386333.1	A24 family peptidase	Machinery gene
NI380_RS03205 (NI380_03200)	-	655049..656271 (-)	1223	Protein_551	type II secretion system F family protein	-
NI380_RS03210 (NI380_03205)	pilB	656295..657980 (-)	1686	WP_020835398.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NI380_RS03215 (NI380_03210)	pilA	657980..658384 (-)	405	WP_015297250.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
NI380_RS03220 (NI380_03215)	nadC	658647..659534 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32313.43 Da
• Isoelectric Point: 7.1970

>NTDB_id=702723 NI380_RS03200 WP_308386333.1 654115..654984(-) (pilD) [Vibrio parahaemolyticus strain BM26A]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEIGPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=702723 NI380_RS03200 WP_308386333.1 654115..654984(-) (pilD) [Vibrio parahaemolyticus strain BM26A]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAGGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCCGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45