Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   NI384_RS01835 Genome accession   NZ_CP099928
Coordinates   388897..389541 (-) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain BM24B     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 383897..394541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI384_RS01825 (NI384_01825) uvrA 384807..387629 (-) 2823 WP_025508045.1 excinuclease ABC subunit UvrA -
  NI384_RS01830 (NI384_01830) galU 387767..388639 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NI384_RS01835 (NI384_01835) qstR 388897..389541 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  NI384_RS01840 (NI384_01840) ssb 389820..390350 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  NI384_RS01845 (NI384_01845) csrD 390591..392600 (+) 2010 WP_025547508.1 RNase E specificity factor CsrD -
  NI384_RS01850 (NI384_01850) - 392612..394057 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=702669 NI384_RS01835 WP_005480993.1 388897..389541(-) (qstR) [Vibrio parahaemolyticus strain BM24B]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=702669 NI384_RS01835 WP_005480993.1 388897..389541(-) (qstR) [Vibrio parahaemolyticus strain BM24B]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGCCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTATTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCCGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523