Detailed information NTG0702523

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NI389_RS06805
• Genome accession: NZ_CP099917
• Coordinates: 1477331..1478230 (+)
• Length: 299 a.a.
• NCBI ID: WP_308362138.1
• Uniprot ID: -
• Organism: Pseudoalteromonas xiamenensis strain PSDB
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1472331..1483230

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI389_RS06780 (NI389_06765)	ampE	1472435..1473286 (-)	852	WP_308362133.1	beta-lactamase regulator AmpE	-
NI389_RS06785 (NI389_06770)	ampD	1473314..1473862 (-)	549	WP_308362134.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
NI389_RS06790 (NI389_06775)	nadC	1474109..1474966 (+)	858	WP_308362135.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NI389_RS06795 (NI389_06780)	-	1475592..1476029 (+)	438	WP_308362136.1	pilin	-
NI389_RS06800 (NI389_06785)	pilC	1476080..1477309 (+)	1230	WP_308362137.1	type II secretion system F family protein	Machinery gene
NI389_RS06805 (NI389_06790)	pilD	1477331..1478230 (+)	900	WP_308362138.1	A24 family peptidase	Machinery gene
NI389_RS06810 (NI389_06795)	coaE	1478227..1478841 (+)	615	WP_308362139.1	dephospho-CoA kinase	-
NI389_RS06815 (NI389_06800)	pilB	1478947..1480626 (+)	1680	WP_308362140.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NI389_RS06820 (NI389_06805)	yacG	1480719..1480961 (+)	243	WP_308362141.1	DNA gyrase inhibitor YacG	-
NI389_RS06830 (NI389_06815)	-	1481563..1482059 (+)	497	Protein_1330	RDD family protein	-
NI389_RS06835 (NI389_06820)	lptG	1482138..1483205 (-)	1068	WP_308362142.1	LPS export ABC transporter permease LptG	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 33114.26 Da
• Isoelectric Point: 6.3175

>NTDB_id=702523 NI389_RS06805 WP_308362138.1 1477331..1478230(+) (pilD) [Pseudoalteromonas xiamenensis strain PSDB]
MLELFTNTLTLLQTNIAFYLVSVGLVSLCIGSFLNVVIYRLPIQLQYEWQTECKLLLAEHLTGSNGEDNRPTFNLAFPNS
HCPKCQTSLKWWHNIPLVSWLLLKGRCGFCQTSISIRYPLIEVLTATMSVVVAWHFGPTEKALLYIVIGWALIALTFIDV
DHMLLPDQITLPLVWVALLAATLNITIAPQEAIIGAAVGYLSLWSVFWLFKLVTGKEGMGYGDFKLMAVFGALLGWEYIL
QIVLLSSVVGAVIGSIQLAVQGKDSATPIPFGPYIAAAGWIAMLFGPQIQSWYFGMLQL

Nucleotide

• Length: 900 bp

>NTDB_id=702523 NI389_RS06805 WP_308362138.1 1477331..1478230(+) (pilD) [Pseudoalteromonas xiamenensis strain PSDB]
ATGTTAGAGCTTTTTACGAACACGCTAACGCTTTTACAAACCAATATTGCGTTTTATTTAGTTTCCGTTGGATTGGTTTC
ACTGTGCATAGGCAGTTTCCTAAACGTGGTTATTTACCGACTCCCCATACAGTTGCAATACGAATGGCAAACTGAATGCA
AACTTCTATTAGCCGAGCATCTAACTGGCTCCAATGGAGAAGACAATAGACCAACATTCAATCTTGCCTTTCCAAATTCG
CACTGCCCAAAGTGCCAAACTTCTCTTAAGTGGTGGCATAACATTCCCTTAGTGAGTTGGCTGCTTTTAAAAGGTCGCTG
TGGATTTTGCCAAACGTCGATAAGTATCCGTTATCCTCTCATTGAAGTACTGACGGCAACTATGAGTGTTGTTGTCGCTT
GGCATTTTGGACCTACCGAGAAAGCATTACTGTATATCGTTATAGGCTGGGCACTTATCGCTCTCACCTTTATCGATGTC
GATCATATGCTACTCCCAGACCAGATTACCCTGCCGCTAGTTTGGGTTGCACTACTTGCCGCGACACTCAATATCACGAT
AGCCCCTCAAGAGGCCATCATTGGCGCAGCTGTTGGTTATTTAAGTCTTTGGAGCGTGTTCTGGCTGTTTAAACTTGTCA
CTGGCAAAGAAGGCATGGGCTATGGTGATTTTAAGCTTATGGCTGTATTTGGCGCCTTACTTGGCTGGGAATACATTTTA
CAAATCGTCTTATTGTCTAGCGTCGTCGGCGCTGTGATCGGCAGTATTCAGCTCGCCGTACAAGGCAAAGACTCCGCAAC
ACCAATTCCGTTCGGCCCTTACATAGCCGCAGCAGGTTGGATAGCGATGTTATTTGGCCCACAAATCCAAAGTTGGTATT
TTGGGATGCTGCAGCTATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-136)

• Type IV leader peptidase family (Peptidase_A24) (147-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	52.313	93.98	0.492
pilD	Acinetobacter nosocomialis M2	51.601	93.98	0.485
pilD	Vibrio cholerae strain A1552	52.574	90.97	0.478
pilD	Vibrio campbellii strain DS40M4	50.542	92.642	0.468
pilD	Neisseria gonorrhoeae MS11	44.186	86.288	0.381