Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   NI390_RS13115 Genome accession   NZ_CP099915
Coordinates   2788129..2788761 (+) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio fluvialis strain Isc7A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2783129..2793761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI390_RS13090 (NI390_13085) - 2783140..2785062 (+) 1923 WP_020329464.1 ABC transporter ATP-binding protein -
  NI390_RS13095 (NI390_13090) - 2785059..2785532 (+) 474 WP_020429267.1 TIGR02444 family protein -
  NI390_RS13100 (NI390_13095) - 2785645..2786622 (+) 978 WP_020429269.1 hydrolase -
  NI390_RS13105 (NI390_13100) - 2786714..2786923 (+) 210 WP_020329461.1 YheU family protein -
  NI390_RS13110 (NI390_13105) - 2787018..2787887 (+) 870 WP_004728583.1 phosphoribulokinase -
  NI390_RS13115 (NI390_13110) crp 2788129..2788761 (+) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  NI390_RS13120 (NI390_13115) - 2788881..2789675 (-) 795 WP_020329460.1 DUF1338 domain-containing protein -
  NI390_RS13125 (NI390_13120) astD 2789861..2791318 (-) 1458 WP_308413236.1 succinylglutamate-semialdehyde dehydrogenase -
  NI390_RS13130 (NI390_13125) astA 2791352..2792371 (-) 1020 WP_165880805.1 arginine N-succinyltransferase -
  NI390_RS13135 (NI390_13130) - 2792471..2793682 (-) 1212 WP_020329456.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=702495 NI390_RS13115 WP_004728582.1 2788129..2788761(+) (crp) [Vibrio fluvialis strain Isc7A]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=702495 NI390_RS13115 WP_004728582.1 2788129..2788761(+) (crp) [Vibrio fluvialis strain Isc7A]
ATGGTTCTAGGTAAACCTCAAACCGACCCGACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTGTCTTACCTGAACCAAGGTGACTTCATCGGTGAGCTTGGCTTGTTTGAAGAAGGT
CAGGAGCGTACTGCCTGGGTTCGTGCAAAATCTCCTTGTGAAGTCGCGGAAATTTCATTCAAGAAATTCCGTCAGCTGAT
TCAGGTTAACCCGGACATCCTAATGCGCCTGTCTGGCCAGATGGCTCGCCGTCTGCAAGTGACTAGCCAAAAAGTGGGTG
ACCTGGCGTTCCTAGACGTAACTGGTCGCATCGCGCAGACCCTACTGAACCTGGCGAAACAACCAGACGCCATGACCCAC
CCAGACGGTATGCAAATCAAGATCACTCGTCAGGAAATCGGTCAAATCGTTGGTTGTTCTCGTGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATTTCTGCACACGGTAAGACTATCGTGGTATACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467