Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   NI390_RS05055 Genome accession   NZ_CP099915
Coordinates   1076126..1078246 (+) Length   706 a.a.
NCBI ID   WP_372587851.1    Uniprot ID   -
Organism   Vibrio fluvialis strain Isc7A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1071126..1083246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI390_RS05030 (NI390_05015) - 1071459..1072029 (-) 571 Protein_924 PilZ domain-containing protein -
  NI390_RS05035 (NI390_05020) lolC 1072205..1073413 (+) 1209 WP_055453396.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  NI390_RS05040 (NI390_05025) lolD 1073406..1074092 (+) 687 WP_044365533.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NI390_RS05045 (NI390_05030) lolE 1074093..1075337 (+) 1245 WP_104965885.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  NI390_RS05050 (NI390_05035) - 1075470..1076000 (-) 531 WP_020327788.1 DUF2062 domain-containing protein -
  NI390_RS05055 (NI390_05040) comEC 1076126..1078246 (+) 2121 WP_372587851.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NI390_RS05060 (NI390_05045) msbA 1078279..1080027 (+) 1749 WP_020327786.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  NI390_RS05065 (NI390_05050) lpxK 1080031..1081038 (+) 1008 WP_020430040.1 tetraacyldisaccharide 4'-kinase -
  NI390_RS05070 (NI390_05055) - 1081019..1081198 (+) 180 WP_020327784.1 Trm112 family protein -
  NI390_RS05075 (NI390_05060) kdsB 1081198..1081941 (+) 744 WP_020327783.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 78828.28 Da        Isoelectric Point: 8.9857

>NTDB_id=702484 NI390_RS05055 WP_372587851.1 1076126..1078246(+) (comEC) [Vibrio fluvialis strain Isc7A]
MTTLAVSRFRVFGGIAFALLVIVTHGNVVRSQSNTIFQAGQDITIKGEVDSFFKQISYGYEGTVVVRSINGQELHTFWQP
KVRLIAPVDLQIGDQFEFSVTVKPVYGRRNEAGFDLEAYYFSQGWVARVNVKPQSKFEVVSTPNLRSMLHRQIKTWTQNS
PSQGMILALTFGDRNGIHEAEWRSLRNSGLIHLVAISGLHIGMAFAIGYLIGSAMMRLHISLLWMPFVSGMCIAAIYAWL
AGFTLPTQRALLMCALNVALTMSGMRVTAVQRILITLAAVLIVTPFAPLSSSFWLSFLAVALVLYQLADRTTRHGWRKWL
TMQCSLVTMMIPVSAYFFSGFSVSSALYNLIFIPYFSFVIVPLLFLALFLTVFVGDITWLWSGIDLSFWPLRRALEWAGS
SWIAVSQTAPVVFSVGLLLWICRPILSWRVQLYAGIALLGLGIFTPQDERWRVDILDVGHGLSVLIERNHNALLYDTGSS
WSEGSYVRSLIVPILNQRGIDSLDGLILSHTDNDHAGGLKDAETLLSPKWVVASQSAPNWQACHAGEQWEWQGLTMTALW
PPQTVNRAYNLQSCVIRLSDPEYGHSLLLAGDVTAVGEWLLSRQPMDIQSDVIIVPHHGSKTSSTRQFIERVSPQVAIAS
LAKGNQWQLPHRSVVARYLDAGSDWLDTGEAGQITLTYQAQSRQLSTLRQIGNPSWYRQMLRKGVE

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=702484 NI390_RS05055 WP_372587851.1 1076126..1078246(+) (comEC) [Vibrio fluvialis strain Isc7A]
ATGACCACGCTCGCGGTGAGCCGATTCAGAGTTTTTGGCGGGATCGCGTTTGCCTTGTTAGTGATAGTAACACATGGCAA
CGTTGTGAGATCTCAATCCAACACTATTTTTCAAGCAGGGCAGGATATTACCATAAAAGGTGAAGTTGACAGCTTTTTTA
AGCAAATTAGTTATGGTTATGAAGGGACTGTAGTAGTCAGATCAATCAATGGACAAGAATTGCACACTTTTTGGCAGCCG
AAGGTGCGGTTAATTGCTCCGGTCGATCTGCAAATTGGCGATCAGTTTGAGTTTTCTGTGACGGTGAAACCCGTTTATGG
CCGCCGTAATGAGGCCGGTTTTGACTTAGAAGCTTACTACTTCAGTCAGGGTTGGGTTGCGAGAGTGAACGTTAAACCAC
AGTCAAAATTTGAGGTCGTTTCAACGCCGAATTTGCGCAGTATGCTGCACCGTCAAATCAAAACATGGACGCAAAATAGC
CCGTCACAAGGCATGATCTTGGCGCTGACATTTGGTGACCGTAACGGCATCCATGAAGCTGAATGGCGCTCACTGAGAAA
CAGCGGACTCATTCATCTGGTGGCGATATCCGGTTTGCATATTGGCATGGCGTTCGCGATTGGTTATCTGATTGGAAGTG
CGATGATGCGGCTGCATATCAGTTTGCTGTGGATGCCTTTCGTTTCCGGGATGTGTATTGCCGCGATTTATGCCTGGCTG
GCAGGATTTACCTTACCGACCCAGCGTGCTTTGTTGATGTGCGCTCTCAACGTCGCTCTCACGATGAGTGGTATGCGTGT
GACGGCGGTGCAACGAATCCTTATCACCCTTGCTGCGGTATTAATCGTGACGCCATTTGCGCCGCTCTCCAGCAGTTTCT
GGCTCTCATTCTTGGCGGTCGCGTTGGTTTTGTATCAATTGGCAGACCGAACAACGCGTCATGGCTGGCGAAAATGGCTG
ACGATGCAATGCTCGTTAGTGACCATGATGATTCCGGTTTCCGCATATTTTTTCTCCGGGTTCAGTGTTTCGTCGGCGCT
CTACAACCTGATTTTTATTCCTTACTTCAGCTTTGTCATTGTGCCGCTGCTGTTTCTCGCACTGTTTCTCACTGTCTTTG
TCGGAGATATCACCTGGCTGTGGAGTGGGATTGACCTGAGCTTCTGGCCACTGCGGCGGGCACTGGAATGGGCGGGATCG
AGCTGGATTGCTGTAAGTCAGACGGCGCCGGTCGTATTTAGCGTTGGCCTTCTCCTTTGGATTTGCCGCCCGATATTAAG
CTGGCGAGTTCAACTCTATGCGGGAATTGCGTTACTTGGCTTGGGCATTTTTACCCCACAGGATGAGCGTTGGCGAGTTG
ACATCCTTGATGTCGGGCACGGTCTGTCAGTGTTGATTGAACGGAATCACAACGCCCTGTTGTACGACACTGGCAGTAGC
TGGTCTGAAGGCAGTTACGTTCGCTCTTTGATCGTTCCAATACTCAATCAGCGCGGTATCGACTCTCTGGATGGTTTAAT
TCTCAGTCATACAGACAATGACCACGCTGGTGGTTTAAAAGATGCCGAAACCTTATTGTCCCCGAAATGGGTTGTGGCGA
GTCAGTCTGCTCCAAATTGGCAGGCTTGCCACGCGGGAGAACAGTGGGAATGGCAAGGACTGACGATGACGGCACTGTGG
CCGCCGCAAACCGTCAATCGTGCTTATAATCTGCAGTCGTGCGTGATTCGATTAAGCGATCCTGAATACGGTCATTCACT
ACTTCTGGCTGGCGATGTTACGGCAGTCGGTGAGTGGTTACTCAGTCGGCAACCCATGGATATTCAGAGCGATGTCATCA
TTGTGCCGCATCACGGCAGTAAAACGTCCTCAACGCGTCAATTTATCGAGCGGGTTTCCCCGCAAGTGGCCATTGCATCT
CTGGCGAAAGGGAATCAATGGCAGTTGCCGCATCGCAGTGTGGTGGCGCGTTATCTGGATGCGGGATCCGACTGGCTTGA
TACTGGCGAGGCGGGGCAAATCACTCTGACCTATCAAGCTCAATCCCGGCAGCTATCGACTCTGCGCCAAATAGGAAATC
CTTCATGGTATAGGCAGATGCTACGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(169-425)

Metallo-beta-lactamase superfamily (Lactamase_B)

(458-639)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

53.759

99.858

0.537
  comEC Vibrio parahaemolyticus RIMD 2210633

43.224

99.292

0.429
  comEC Vibrio campbellii strain DS40M4

41.903

99.717

0.418