Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NIY04_RS15660 Genome accession   NZ_CP099856
Coordinates   3255720..3256130 (-) Length   136 a.a.
NCBI ID   WP_001200147.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 17978S     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3250720..3261130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY04_RS15630 (NIY04_15630) - 3250806..3251075 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  NIY04_RS15635 (NIY04_15635) rapZ 3251072..3251923 (-) 852 WP_000821671.1 RNase adapter RapZ -
  NIY04_RS15640 (NIY04_15640) panC 3251946..3252794 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  NIY04_RS15645 (NIY04_15645) panB 3252798..3253607 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  NIY04_RS15650 (NIY04_15650) folK 3253653..3254135 (-) 483 WP_000219221.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  NIY04_RS15655 (NIY04_15655) pcnB 3254132..3255595 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  NIY04_RS15660 (NIY04_15660) comEA 3255720..3256130 (-) 411 WP_001200147.1 ComEA family DNA-binding protein Machinery gene
  NIY04_RS15665 (NIY04_15665) mazG 3256099..3256905 (-) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  NIY04_RS15670 (NIY04_15670) - 3257017..3257790 (+) 774 WP_000682838.1 SDR family oxidoreductase -
  NIY04_RS15675 (NIY04_15675) - 3257835..3260141 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15690.99 Da        Isoelectric Point: 10.4475

>NTDB_id=701953 NIY04_RS15660 WP_001200147.1 3255720..3256130(-) (comEA) [Acinetobacter baumannii strain 17978S]
MQYSMRFWKNKYFVLIMLCLGGISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKFSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=701953 NIY04_RS15660 WP_001200147.1 3255720..3256130(-) (comEA) [Acinetobacter baumannii strain 17978S]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGGGGAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTTTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baumannii strain A118

94.853

100

0.949
  comEA Acinetobacter baylyi ADP1

44.444

92.647

0.412