Detailed information NTG0701503

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NHF42_RS21270
• Genome accession: NZ_CP099748
• Coordinates: 4383705..4384505 (+)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain 806883-10-2019
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4378705..4389505

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NHF42_RS21235 (NHF42_21225)	gspH	4378861..4379376 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
NHF42_RS21240 (NHF42_21230)	gspI	4379373..4379738 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
NHF42_RS21245 (NHF42_21235)	gspJ	4379735..4380331 (+)	597	WP_087761591.1	type II secretion system minor pseudopilin GspJ	-
NHF42_RS21250 (NHF42_21240)	gspK	4380328..4381314 (+)	987	WP_260565862.1	type II secretion system minor pseudopilin GspK	-
NHF42_RS21255 (NHF42_21245)	gspL	4381301..4382494 (+)	1194	WP_087867005.1	type II secretion system protein GspL	-
NHF42_RS21260 (NHF42_21250)	-	4382487..4382972 (+)	486	WP_004151943.1	type II secretion system protein M	-
NHF42_RS21265 (NHF42_21255)	-	4382962..4383708 (+)	747	WP_004145897.1	type II secretion system protein N	-
NHF42_RS21270 (NHF42_21260)	pilD	4383705..4384505 (+)	801	WP_004213441.1	prepilin peptidase	Machinery gene
NHF42_RS21275 (NHF42_21265)	hrpB	4384553..4386982 (-)	2430	WP_004177388.1	ATP-dependent helicase HrpB	-
NHF42_RS21280 (NHF42_21270)	thpR	4387055..4387591 (+)	537	WP_087867007.1	RNA 2',3'-cyclic phosphodiesterase	-
NHF42_RS21285 (NHF42_21275)	sfsA	4387591..4388307 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
NHF42_RS21290 (NHF42_21280)	dksA	4388470..4388925 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=701503 NHF42_RS21270 WP_004213441.1 4383705..4384505(+) (pilD) [Klebsiella pneumoniae strain 806883-10-2019]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=701503 NHF42_RS21270 WP_004213441.1 4383705..4384505(+) (pilD) [Klebsiella pneumoniae strain 806883-10-2019]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCATGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425