NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	NHU86_RS02220	Genome accession	NZ_CP099742
Coordinates	455701..456576 (-)	Length	291 a.a.
NCBI ID	WP_113069551.1	Uniprot ID	-
Organism	Aeromonas caviae strain OT55
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 450701..461576

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NHU86_RS02195 (NHU86_02190)	-	452448..453632 (+)	1185	WP_113069549.1	tetratricopeptide repeat protein	-
NHU86_RS02200 (NHU86_02195)	mutT	453641..454045 (+)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
NHU86_RS02205 (NHU86_02200)	yacG	454103..454297 (-)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
NHU86_RS02210 (NHU86_02205)	zapD	454308..455030 (-)	723	WP_010675825.1	cell division protein ZapD	-
NHU86_RS02215 (NHU86_02210)	coaE	455068..455682 (-)	615	WP_113069550.1	dephospho-CoA kinase	-
NHU86_RS02220 (NHU86_02215)	pilD	455701..456576 (-)	876	WP_113069551.1	A24 family peptidase	Machinery gene
NHU86_RS02225 (NHU86_02220)	pilC	456654..457895 (-)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
NHU86_RS02230 (NHU86_02225)	pilB	458023..459729 (-)	1707	WP_041213997.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NHU86_RS02235 (NHU86_02230)	-	459733..460278 (-)	546	WP_113069552.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NHU86_RS02240 (NHU86_02235)	nadC	460589..461452 (-)	864	WP_042864860.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 291 a.a. Molecular weight: 32095.19 Da Isoelectric Point: 6.5959

                                >NTDB_id=701436 NHU86_RS02220 WP_113069551.1 455701..456576(-) (pilD) [Aeromonas caviae strain OT55]

MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH

PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD

QLTLPLLWGGLLFNLAGDFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS

LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

Download Length: 876 bp

                                >NTDB_id=701436 NHU86_RS02220 WP_113069551.1 455701..456576(-) (pilD) [Aeromonas caviae strain OT55]

ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG

CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG

GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCTCGCTCCCGCTGCCCCCACTGCGACCAC

CCCATAGGGGCGTTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT

TTCGGCTCGCTATCCCCTGGTTGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTGCCCCCGGCTGGG

GCACCCTTGCCGCTCTGTTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT

CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGATTTCGTGCCCCTGGCCGATGGGGTGGT

CGGCGCCATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT

ATGGCGACTTCAAACTGCTGGCGGCACTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG

CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA

TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(140-248)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	60.417	98.969	0.598
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	51.971	95.876	0.498
pilD	Acinetobacter nosocomialis M2	51.971	95.876	0.498
pilD	Neisseria gonorrhoeae MS11	50.958	89.691	0.457

Detailed information NTG0701436