Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | M2Y48_RS03960 | Genome accession | NZ_AP023344 |
| Coordinates | 824970..825230 (+) | Length | 86 a.a. |
| NCBI ID | WP_000602756.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain JSHR3 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 819970..830230
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2Y48_RS03935 (JSHR3_08080) | comB10 | 820136..821338 (+) | 1203 | WP_212847301.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| M2Y48_RS03940 (JSHR3_08090) | - | 821322..821879 (+) | 558 | Protein_782 | collagen-like protein | - |
| M2Y48_RS03945 (JSHR3_08100) | - | 821984..822748 (+) | 765 | WP_096468240.1 | hypothetical protein | - |
| M2Y48_RS03950 | - | 822759..824677 (+) | 1919 | Protein_784 | toprim domain-containing protein | - |
| M2Y48_RS03955 (JSHR3_08140) | - | 824667..824969 (+) | 303 | WP_000649842.1 | TrbC/VirB2 family protein | - |
| M2Y48_RS03960 (JSHR3_08150) | comB3 | 824970..825230 (+) | 261 | WP_000602756.1 | hypothetical protein | Machinery gene |
| M2Y48_RS03965 (JSHR3_08160) | - | 825243..827741 (+) | 2499 | WP_248419534.1 | VirB4 family type IV secretion system protein | - |
| M2Y48_RS03970 (JSHR3_08170) | - | 827734..829668 (+) | 1935 | WP_001870316.1 | type IA DNA topoisomerase | - |
| M2Y48_RS07860 (JSHR3_08180) | - | 829668..829796 (+) | 129 | WP_001185489.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 10154.04 Da Isoelectric Point: 4.6082
>NTDB_id=70127 M2Y48_RS03960 WP_000602756.1 824970..825230(+) (comB3) [Helicobacter pylori strain JSHR3]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA
Nucleotide
Download Length: 261 bp
>NTDB_id=70127 M2Y48_RS03960 WP_000602756.1 824970..825230(+) (comB3) [Helicobacter pylori strain JSHR3]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
44.828 |
100 |
0.453 |