Detailed information NTG0070126

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: M2Y48_RS03935
• Genome accession: NZ_AP023344
• Coordinates: 820136..821338 (+)
• Length: 400 a.a.
• NCBI ID: WP_212847301.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain JSHR3
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 815136..826338

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M2Y48_RS03920	-	817237..817371 (+)	135	WP_033582542.1	hypothetical protein	-
M2Y48_RS03925 (JSHR3_08050)	-	817364..818470 (+)	1107	WP_108303929.1	VirB8/TrbF family protein	-
M2Y48_RS03930 (JSHR3_08070)	-	818467..820139 (+)	1673	Protein_780	TrbG/VirB9 family P-type conjugative transfer protein	-
M2Y48_RS03935 (JSHR3_08080)	comB10	820136..821338 (+)	1203	WP_212847301.1	DNA type IV secretion system protein ComB10	Machinery gene
M2Y48_RS03940 (JSHR3_08090)	-	821322..821879 (+)	558	Protein_782	collagen-like protein	-
M2Y48_RS03945 (JSHR3_08100)	-	821984..822748 (+)	765	WP_096468240.1	hypothetical protein	-
M2Y48_RS03950	-	822759..824677 (+)	1919	Protein_784	toprim domain-containing protein	-
M2Y48_RS03955 (JSHR3_08140)	-	824667..824969 (+)	303	WP_000649842.1	TrbC/VirB2 family protein	-
M2Y48_RS03960 (JSHR3_08150)	comB3	824970..825230 (+)	261	WP_000602756.1	hypothetical protein	Machinery gene

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44739.44 Da
• Isoelectric Point: 9.9651

>NTDB_id=70126 M2Y48_RS03935 WP_212847301.1 820136..821338(+) (comB10) [Helicobacter pylori strain JSHR3]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEESPKTITTPQPTAPTTT
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPAIKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=70126 M2Y48_RS03935 WP_212847301.1 820136..821338(+) (comB10) [Helicobacter pylori strain JSHR3]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGATTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTACT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTCTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCATTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACAATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGTATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGTCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.435	98.25	0.525