Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NF674_RS22250 Genome accession   NZ_CP099610
Coordinates   5025382..5026728 (+) Length   448 a.a.
NCBI ID   WP_252875102.1    Uniprot ID   -
Organism   Pseudomonas moraviensis strain OTU5VILLAA1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5020382..5031728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF674_RS22225 (NF674_22225) pgeF 5020570..5021319 (-) 750 WP_252875101.1 peptidoglycan editing factor PgeF -
  NF674_RS22230 (NF674_22230) rluD 5021316..5022278 (-) 963 WP_042610487.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NF674_RS22235 (NF674_22235) - 5022430..5023446 (+) 1017 WP_064364119.1 outer membrane protein assembly factor BamD -
  NF674_RS22240 (NF674_22240) - 5023573..5023806 (+) 234 WP_039761661.1 PP0621 family protein -
  NF674_RS22245 (NF674_22245) pilS 5023796..5025385 (+) 1590 WP_116658819.1 ATP-binding protein Regulator
  NF674_RS22250 (NF674_22250) pilR 5025382..5026728 (+) 1347 WP_252875102.1 sigma-54 dependent transcriptional regulator Regulator
  NF674_RS22255 (NF674_22255) thiO 5026817..5027917 (-) 1101 WP_252875103.1 glycine oxidase ThiO -
  NF674_RS22260 (NF674_22260) - 5027976..5028377 (-) 402 WP_227973093.1 type IV pilin protein -
  NF674_RS22265 (NF674_22265) - 5028393..5031482 (-) 3090 WP_252875104.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50115.45 Da        Isoelectric Point: 6.5117

>NTDB_id=701113 NF674_RS22250 WP_252875102.1 5025382..5026728(+) (pilR) [Pseudomonas moraviensis strain OTU5VILLAA1]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRAPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRMSTAGGLNTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCEQRTIEAQDLRLSEGNCAADGATADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=701113 NF674_RS22250 WP_252875102.1 5025382..5026728(+) (pilR) [Pseudomonas moraviensis strain OTU5VILLAA1]
TTGAATACAAGCCCACGGCAGAAAATTCTTATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAACCTGGGCGAGGCTCAGGCGCTGTTACAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTAGTGCAACACATCCAGCAGCGCGCTCCGCATCTACCG
GTGGCGATGATCACCGCGTACGGAAGCCTGGAAACGGCGATCAATGCGCTGAAGGCCGGCGCGTTCGATTTCCTCACCAA
ACCAGTGGAGCTGCCGCGACTGCGCGAACTGGTCAGTTCGGCGCTGCGCATGTCGACAGCGGGTGGCCTGAACACGGCAA
TCGAGCGACGCTTGCTGGGCGACTCGCCGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCGCGCAGCCAGGCG
CCGGTGTACATCAGCGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCACGCCTGATTCACGAACAAGGCCCGCGCGCGAG
CCAGCCCTTTGTACCGGTGAACTGCGGGGCCATTCCGTCGGAGCTGATGGAAAGCGAATTCTTCGGCCACCGCAAAGGCA
GTTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTGTTCCAGGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTTGCC
GATCTGCCACTGCCGATGCAGGTGAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTCGACGTGCGCATCCTGTGCGCCACACACAAAGACCTTGAAGCCGAAGTCGCGGCCGAGCGCTTCCGTCAGG
ATCTGTATTACCGGCTCAACGTCATTGAACTGCGCGTGCCCTCCCTGCGAGAACGTCGCGACGACATCGAGGCGCTCGCC
ATGCATGTGCTCAAGCGTCTGGCCAAGGACACTGGACAACCCGAAGCGCGCCTGCATCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAACGTGCGCGAACTGGAGAATGTCCTCGAACGCGCGCACACCTTGTGTGAACAGCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGAAATTGCGCCGCGGATGGGGCGACGGCTGATCTGACGCAGATCGACAAT
CTCGAGGATTATCTGGAGAGCGTCGAGCGCAAACTCATTCTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCGATGCGTTATCGGCTGAAGAAGTTGGGTCTGGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.33

98.884

0.775
  pilR Acinetobacter baumannii strain A118

49.02

100

0.502