Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NF673_RS22475 Genome accession   NZ_CP099609
Coordinates   5084098..5085444 (+) Length   448 a.a.
NCBI ID   WP_252880802.1    Uniprot ID   -
Organism   Pseudomonas moraviensis strain OTU5MASSA1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5079098..5090444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF673_RS22450 (NF673_22450) pgeF 5079286..5080035 (-) 750 WP_252880801.1 peptidoglycan editing factor PgeF -
  NF673_RS22455 (NF673_22455) rluD 5080032..5080994 (-) 963 WP_042610487.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NF673_RS22460 (NF673_22460) - 5081146..5082162 (+) 1017 WP_064364119.1 outer membrane protein assembly factor BamD -
  NF673_RS22465 (NF673_22465) - 5082289..5082522 (+) 234 WP_039761661.1 PP0621 family protein -
  NF673_RS22470 (NF673_22470) pilS 5082512..5084101 (+) 1590 WP_116658819.1 ATP-binding protein Regulator
  NF673_RS22475 (NF673_22475) pilR 5084098..5085444 (+) 1347 WP_252880802.1 sigma-54 dependent transcriptional regulator Regulator
  NF673_RS22480 (NF673_22480) thiO 5085533..5086633 (-) 1101 WP_116658389.1 glycine oxidase ThiO -
  NF673_RS22485 (NF673_22485) - 5086692..5087093 (-) 402 WP_252880803.1 type IV pilin protein -
  NF673_RS22490 (NF673_22490) - 5087109..5090198 (-) 3090 WP_252880804.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50114.46 Da        Isoelectric Point: 6.5117

>NTDB_id=701084 NF673_RS22475 WP_252880802.1 5084098..5085444(+) (pilR) [Pseudomonas moraviensis strain OTU5MASSA1]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRAPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRMPTAGGLSTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKSVRSVGGQQETVVDVRILCATHKDLEAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCEQRTIEAQDLRLSEGNCAADGATADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=701084 NF673_RS22475 WP_252880802.1 5084098..5085444(+) (pilR) [Pseudomonas moraviensis strain OTU5MASSA1]
TTGAATACAAGCCCACGGCAAAAAATTCTTATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAACCTGGGCGAGGCTCAGGCGCTGTTACAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATCCAGCAGCGCGCTCCGCATCTGCCG
GTGGCGATGATCACCGCGTACGGAAGCCTGGAAACGGCGATCAATGCGCTGAAGGCCGGCGCGTTCGATTTCCTCACCAA
ACCAGTGGAGCTGCCGCGACTGCGCGAACTGGTCAGCTCGGCGCTGCGCATGCCGACAGCCGGTGGCCTGAGTACGGCAA
TCGAGCGACGCTTGCTGGGCGACTCGCCGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCGCGCAGCCAGGCG
CCGGTGTACATCAGCGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCGCGCCTGATTCACGAACAAGGCCCGCGCGCGAG
CCAGCCCTTTGTGCCGGTGAACTGCGGGGCGATTCCGTCGGAGCTGATGGAAAGCGAATTCTTCGGCCACCGCAAAGGCA
GTTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTGTTCCAGGCGGCACACGGCGGCACGTTGTTTCTCGATGAAGTCGCC
GATCTGCCACTGCCGATGCAGGTGAAACTGCTGCGGGCGATTCAGGAAAAATCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTCGACGTGCGCATCCTGTGCGCCACACACAAAGACCTTGAAGCCGAAGTCGCGGCCGAGCGCTTCCGTCAGG
ATCTGTATTACCGGCTCAACGTCATTGAACTGCGTGTGCCCTCCCTGCGAGAACGTCGCGACGACATCGAGGCGCTCGCC
ATGCATGTGCTCAAGCGTCTGGCCAAGGACACTGGACAACCCGAAGCGCGCCTGCATCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAACGTGCGCGAACTGGAGAATGTCCTCGAACGCGCGCACACCTTGTGTGAACAGCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGAAATTGCGCCGCGGATGGGGCGACGGCTGATCTGACGCAGATCGACAAT
CTCGAGGATTATCTGGAGAGCGTCGAGCGCAAACTCATTCTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCGATGCGTTATCGGCTGAAGAAGTTGGGTCTGGACTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

98.884

0.772
  pilR Acinetobacter baumannii strain A118

49.02

100

0.502