Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NF673_RS22470 Genome accession   NZ_CP099609
Coordinates   5082512..5084101 (+) Length   529 a.a.
NCBI ID   WP_116658819.1    Uniprot ID   A0A2U1R5F2
Organism   Pseudomonas moraviensis strain OTU5MASSA1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5077512..5089101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF673_RS22450 (NF673_22450) pgeF 5079286..5080035 (-) 750 WP_252880801.1 peptidoglycan editing factor PgeF -
  NF673_RS22455 (NF673_22455) rluD 5080032..5080994 (-) 963 WP_042610487.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NF673_RS22460 (NF673_22460) - 5081146..5082162 (+) 1017 WP_064364119.1 outer membrane protein assembly factor BamD -
  NF673_RS22465 (NF673_22465) - 5082289..5082522 (+) 234 WP_039761661.1 PP0621 family protein -
  NF673_RS22470 (NF673_22470) pilS 5082512..5084101 (+) 1590 WP_116658819.1 ATP-binding protein Regulator
  NF673_RS22475 (NF673_22475) pilR 5084098..5085444 (+) 1347 WP_252880802.1 sigma-54 dependent transcriptional regulator Regulator
  NF673_RS22480 (NF673_22480) thiO 5085533..5086633 (-) 1101 WP_116658389.1 glycine oxidase ThiO -
  NF673_RS22485 (NF673_22485) - 5086692..5087093 (-) 402 WP_252880803.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58625.22 Da        Isoelectric Point: 6.9043

>NTDB_id=701083 NF673_RS22470 WP_116658819.1 5082512..5084101(+) (pilS) [Pseudomonas moraviensis strain OTU5MASSA1]
MVAEAANADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFVLSFSHPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSHLQGHLID
EYSPALVDRLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGETREQATER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQAEVWLALFVDPDSQLAVLEVQDNGPGVSADEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=701083 NF673_RS22470 WP_116658819.1 5082512..5084101(+) (pilS) [Pseudomonas moraviensis strain OTU5MASSA1]
GTGGTCGCTGAGGCCGCCAACGCCGACCAGAAACAGGCTCAGCGTCTGCTGCGCCTTTATCACCTGTACCGCTTGAGTGT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GTGGCAGCTGGCTGTATCTGATCATCAATATGCTGCTGGTGGTGTTCCTCGAAAACACCCGGCGCCCGGCGCAACTGTTC
ACTTTAGCGTTGGTCGATGTGCTGCTGTTGTGCGGCCTGTTCTACGCCGCTGGTGGCGTCGCCAGTGCGCTGGGCAATCT
GTTGGTCGTCTCGGTGGCGATCAGCAATACCCTGCTGCGCCGGCGCATCGGCCTGCTGATTGCCGCCATCGCGGCGATCG
GCATTGTCGGCCTGAGCTTTGTGCTGAGCTTCAGCCATCCCCTCAGCGCCAACGCCTACCTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTTGCCGCCTCGTTGCTGGTGCAAGGGCTGATCCGCCGCCTCGAAGTCAGTGAAACCCTCGCCGAACAGCG
CGCCAGTGAAGTGGTTGGCCTGGAAGCGCTCAACGCGTTGATCCTGCAACGCATGCGCACTGGCATTCTGGTGCTCGATG
AGCAACGCCGGGTGCAACTGGCCAATCACAGCGCGCAAAGCCTGCTCGGCCATAGCCACCTGCAAGGTCATTTGATCGAT
GAGTATTCGCCCGCGCTGGTCGATCGCCTGCAACTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGCCTGAAAATTCC
CGGCAATGGCCTTGAGCTGCAACCAAGCTTCATCGCCCTTGAGCAGAGCCCGAACCAGCAGACCCTGGTGTTTCTCGAAG
ATCTGGCGCAAATCACCCAACAGGCGCAGCAACTCAAACTCGCTGCGCTCGGGCGTTTGACCGCGGGCATCTCCCACGAA
ATTCGCAATCCGTTGGGCGCAATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGTCAGC
AAAGCGCACCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGACTTCGTCGGCGAAACCCGCGAGCAGGCCACCGAGCGC
CAGCACATTCATCTACGGATCAATTCGGGCGACTTCACCACGCTGATGGACCCCAACCAGCTGCGGCAGATTCTCGACAA
TCTGATACGCAACGCCTGGCGGCACAGTGCCCAGTTGCACGAGCAGGCCGAGGTCTGGCTGGCGCTGTTCGTCGACCCCG
ACAGCCAGTTGGCAGTACTCGAAGTGCAGGACAACGGCCCCGGCGTGTCGGCCGACGAGCAGGCGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U1R5F2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.599