Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NF672_RS22385 Genome accession   NZ_CP099608
Coordinates   5053359..5054705 (+) Length   448 a.a.
NCBI ID   WP_064364117.1    Uniprot ID   -
Organism   Pseudomonas moraviensis strain OTU5BARRA1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5048359..5059705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF672_RS22360 (NF672_22360) pgeF 5048574..5049296 (-) 723 WP_064364120.1 peptidoglycan editing factor PgeF -
  NF672_RS22365 (NF672_22365) rluD 5049293..5050255 (-) 963 WP_042610487.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NF672_RS22370 (NF672_22370) - 5050407..5051423 (+) 1017 WP_064364119.1 outer membrane protein assembly factor BamD -
  NF672_RS22375 (NF672_22375) - 5051550..5051783 (+) 234 WP_039761661.1 PP0621 family protein -
  NF672_RS22380 (NF672_22380) pilS 5051773..5053362 (+) 1590 WP_116658819.1 ATP-binding protein Regulator
  NF672_RS22385 (NF672_22385) pilR 5053359..5054705 (+) 1347 WP_064364117.1 sigma-54 dependent transcriptional regulator Regulator
  NF672_RS22390 (NF672_22390) thiO 5054794..5055894 (-) 1101 WP_252873383.1 glycine oxidase ThiO -
  NF672_RS22395 (NF672_22395) - 5055952..5056353 (-) 402 WP_042610493.1 type IV pilin protein -
  NF672_RS22400 (NF672_22400) - 5056369..5059458 (-) 3090 WP_252873384.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50112.49 Da        Isoelectric Point: 6.5117

>NTDB_id=701055 NF672_RS22385 WP_064364117.1 5053359..5054705(+) (pilR) [Pseudomonas moraviensis strain OTU5BARRA1]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRAPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRMPTAGGLSTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLEAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCEQRTIEAQDLRLSEGNCAADGATADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=701055 NF672_RS22385 WP_064364117.1 5053359..5054705(+) (pilR) [Pseudomonas moraviensis strain OTU5BARRA1]
TTGAATACAAGCCCACGGCAAAAAATTCTTATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAATCTGGGCGAGGCTCAGGCGCTGTTACAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGTTGGTGCAACACATCCAGCAGCGCGCTCCGCATCTGCCG
GTGGCGATGATCACCGCGTACGGAAGCCTGGAAACGGCGATCAATGCGCTGAAGGCCGGCGCGTTCGATTTCCTCACCAA
ACCAGTGGAGCTGCCGCGACTGCGCGAACTGGTCAGTTCGGCGCTGCGCATGCCGACAGCCGGTGGCCTGAGTACGGCAA
TCGAGCGACGCTTGCTGGGCGACTCGCCGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCGCGCAGCCAGGCG
CCGGTGTACATCAGCGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCACGCCTGATTCACGAACAAGGCCCGCGCGCCAG
CCAGCCCTTTGTGCCGGTGAACTGCGGGGCGATTCCGTCGGAGCTGATGGAAAGCGAATTCTTCGGCCACCGCAAAGGCA
GTTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTGTTCCAGGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTTGCC
GATCTGCCACTGCCGATGCAGGTGAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCATCGGCGGCCAGCAGGA
AACGGTGGTCGACGTGCGCATCCTGTGCGCCACACACAAAGACCTTGAAGCCGAAGTCGCGGCCGAGCGCTTCCGTCAGG
ATCTGTATTACCGGCTCAACGTCATTGAACTGCGCGTGCCCTCCCTGCGAGAACGTCGCGACGACATCGAGGCGCTCGCC
ATGCATGTGCTCAAGCGTCTGGCCAAGGACACTGGACAACCCGAAGCGCGCCTGCATCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAACGTGCGCGAACTGGAGAATGTCCTCGAACGCGCGCACACCTTGTGTGAACAGCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGAAATTGCGCCGCGGATGGGGCGACGGCTGATCTGACGCAGATCGACAAT
CTCGAGGATTATCTGGAGAGCGTCGAGCGCAAACTCATTCTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCGATGCGTTATCGGCTGAAGAAGTTGGGTCTGGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

98.884

0.772
  pilR Acinetobacter baumannii strain A118

48.802

100

0.5