Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NF672_RS22380 Genome accession   NZ_CP099608
Coordinates   5051773..5053362 (+) Length   529 a.a.
NCBI ID   WP_116658819.1    Uniprot ID   A0A2U1R5F2
Organism   Pseudomonas moraviensis strain OTU5BARRA1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5046773..5058362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF672_RS22360 (NF672_22360) pgeF 5048574..5049296 (-) 723 WP_064364120.1 peptidoglycan editing factor PgeF -
  NF672_RS22365 (NF672_22365) rluD 5049293..5050255 (-) 963 WP_042610487.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NF672_RS22370 (NF672_22370) - 5050407..5051423 (+) 1017 WP_064364119.1 outer membrane protein assembly factor BamD -
  NF672_RS22375 (NF672_22375) - 5051550..5051783 (+) 234 WP_039761661.1 PP0621 family protein -
  NF672_RS22380 (NF672_22380) pilS 5051773..5053362 (+) 1590 WP_116658819.1 ATP-binding protein Regulator
  NF672_RS22385 (NF672_22385) pilR 5053359..5054705 (+) 1347 WP_064364117.1 sigma-54 dependent transcriptional regulator Regulator
  NF672_RS22390 (NF672_22390) thiO 5054794..5055894 (-) 1101 WP_252873383.1 glycine oxidase ThiO -
  NF672_RS22395 (NF672_22395) - 5055952..5056353 (-) 402 WP_042610493.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58625.22 Da        Isoelectric Point: 6.9043

>NTDB_id=701054 NF672_RS22380 WP_116658819.1 5051773..5053362(+) (pilS) [Pseudomonas moraviensis strain OTU5BARRA1]
MVAEAANADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFVLSFSHPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSHLQGHLID
EYSPALVDRLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGETREQATER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQAEVWLALFVDPDSQLAVLEVQDNGPGVSADEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=701054 NF672_RS22380 WP_116658819.1 5051773..5053362(+) (pilS) [Pseudomonas moraviensis strain OTU5BARRA1]
GTGGTCGCTGAGGCCGCCAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTGTACCGCTTGAGTGT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GTGGCAGCTGGCTGTATCTGATCATCAATATGCTGCTGGTGGTGTTCCTCGAAAACACCCGGCGCCCGGCGCAACTGTTC
ACTTTAGCGTTGGTCGATGTGCTGCTGTTGTGCGGCCTGTTCTACGCCGCTGGCGGCGTCGCCAGTGCGCTGGGCAATCT
GTTGGTCGTCTCGGTGGCGATCAGCAATACCCTGCTGCGCCGGCGCATCGGCCTGCTGATTGCCGCCATTGCGGCGATCG
GCATTGTCGGCCTGAGCTTTGTGCTGAGCTTCAGCCATCCCCTCAGCGCCAACGCCTACCTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTTGCCGCCTCGTTGCTGGTGCAAGGGCTGATCCGCCGCCTCGAAGTCAGTGAAACCCTCGCCGAACAGCG
CGCCAGTGAAGTGGTTGGCCTGGAAGCGCTCAACGCGTTGATCCTGCAACGCATGCGCACTGGCATTCTGGTGCTCGATG
AGCAACGCCGGGTGCAACTGGCCAATCACAGCGCGCAGAGCCTGCTCGGCCATAGCCACCTGCAAGGTCATTTGATCGAT
GAGTATTCGCCCGCGCTGGTCGATCGCCTGCAACTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAACGGCCTCGAGCTGCAACCAAGCTTCATCGCCCTCGAGCAGAGCCCGAACCAGCAGACCCTGGTGTTTCTCGAAG
ATCTGGCGCAAATCACTCAACAGGCGCAGCAACTCAAACTCGCTGCGCTCGGGCGTTTGACCGCGGGCATCTCCCACGAA
ATTCGCAATCCGTTGGGCGCAATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAATTGTCCCGCCGTCAGC
AAAGCGCACCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGACTTCGTCGGCGAAACCCGCGAGCAGGCCACCGAGCGC
CAGCACATTCATCTACGGATCAATTCGGGCGACTTCACCACGCTGATGGACCCCAACCAGCTGCGGCAGATTCTCGACAA
TCTGATCCGCAACGCCTGGCGGCACAGTGCCCAGTTGCACGAGCAGGCCGAGGTCTGGCTGGCGCTGTTCGTCGACCCCG
ACAGCCAGTTGGCAGTACTCGAAGTGCAGGACAACGGCCCCGGCGTGTCGGCCGACGAGCAGGCGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U1R5F2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.599