Detailed information NTG0701053

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NF672_RS22290
• Genome accession: NZ_CP099608
• Coordinates: 5037775..5038647 (+)
• Length: 290 a.a.
• NCBI ID: WP_252873380.1
• Uniprot ID: -
• Organism: Pseudomonas moraviensis strain OTU5BARRA1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5032775..5043647

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF672_RS22265 (NF672_22265)	-	5032969..5033268 (+)	300	WP_064364128.1	DUF2845 domain-containing protein	-
NF672_RS22270 (NF672_22270)	-	5033536..5033889 (-)	354	WP_064364127.1	BON domain-containing protein	-
NF672_RS22275 (NF672_22275)	-	5034189..5034626 (-)	438	WP_064364126.1	pilin	-
NF672_RS22280 (NF672_22280)	pilB	5034853..5036553 (+)	1701	WP_252873379.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NF672_RS22285 (NF672_22285)	pilC	5036556..5037773 (+)	1218	WP_065615667.1	type II secretion system F family protein	Machinery gene
NF672_RS22290 (NF672_22290)	pilD	5037775..5038647 (+)	873	WP_252873380.1	A24 family peptidase	Machinery gene
NF672_RS22295 (NF672_22295)	coaE	5038644..5039267 (+)	624	WP_042610481.1	dephospho-CoA kinase	-
NF672_RS22300 (NF672_22300)	yacG	5039264..5039464 (+)	201	WP_016773149.1	DNA gyrase inhibitor YacG	-
NF672_RS22305 (NF672_22305)	-	5039514..5040203 (-)	690	WP_065615664.1	energy-coupling factor ABC transporter permease	-
NF672_RS22310 (NF672_22310)	-	5040393..5041019 (+)	627	WP_007909887.1	DUF1780 domain-containing protein	-
NF672_RS22315 (NF672_22315)	-	5041016..5041543 (+)	528	WP_065615663.1	MOSC domain-containing protein	-
NF672_RS22320 (NF672_22320)	-	5041595..5041768 (+)	174	WP_007909875.1	DUF3094 domain-containing protein	-
NF672_RS22325 (NF672_22325)	-	5041832..5043130 (+)	1299	WP_252873381.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31929.15 Da
• Isoelectric Point: 7.0620

>NTDB_id=701053 NF672_RS22290 WP_252873380.1 5037775..5038647(+) (pilD) [Pseudomonas moraviensis strain OTU5BARRA1]
MPIDELFAVYPLAFVLTALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPIETPAPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLVLRGCCSACSAPISRRYPLTELACGLLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVPLSDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQVLPLTILLSSLVG
AVFGVLMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=701053 NF672_RS22290 WP_252873380.1 5037775..5038647(+) (pilD) [Pseudomonas moraviensis strain OTU5BARRA1]
ATGCCTATCGACGAACTGTTTGCCGTGTACCCGCTGGCCTTTGTGCTCACCGCGCTGCTGCTTGGTCTGGTGGTCGGCAG
CTTCCTCAATGTTGTGGTCTGGCGTCTGCCGAAAATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCCATTGAAACACCTGCGCCGACCTACAACCTGATGCTGCCGCATTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAATATTCCGCTGCTCAGTTATCTGGTGCTGCGCGGGTGCTGCTCGGCCTGCTCGGCACCGATCAGCAGACG
TTACCCGCTGACCGAGCTGGCCTGCGGCCTGCTCTCGGCCTTCATCGCCTGGCACCTTGGCTTCGGCTGGCCGGCGGGTC
TGCTGATCTTGCTGACGTGGGGCTTGCTGGCGATGAGCCTGATCGACTGCGAGCATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGTTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTATTCGTGCCGTTGTCCGATGCGCTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGTTACTCACCGGCAAGGACGGCATCGGCCATGGCGATT
TCAAGCTGCTGGCCTTGCTCGGTGCATGGGGTGGCTGGCAGGTTCTGCCCCTGACCATTCTGTTGTCATCGCTGGTGGGG
GCGGTTTTCGGCGTGCTGATGCTGCGTCTGCGCGCCCAGGAAACCTCGACGCCGATCCCGTTCGGGCCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.577	97.931	0.534
pilD	Vibrio campbellii strain DS40M4	52.632	98.276	0.517
pilD	Neisseria gonorrhoeae MS11	46.341	98.966	0.459
pilD	Acinetobacter baumannii D1279779	47.08	94.483	0.445
pilD	Acinetobacter nosocomialis M2	47.08	94.483	0.445