Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | NF680_RS22215 | Genome accession | NZ_CP099602 |
| Coordinates | 4984867..4985739 (+) | Length | 290 a.a. |
| NCBI ID | WP_252876914.1 | Uniprot ID | - |
| Organism | Pseudomonas siliginis strain OTU6MONTID1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4979867..4990739
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NF680_RS22190 (NF680_22190) | - | 4980083..4980382 (+) | 300 | WP_252876911.1 | DUF2845 domain-containing protein | - |
| NF680_RS22195 (NF680_22195) | - | 4980647..4981000 (-) | 354 | WP_071173629.1 | BON domain-containing protein | - |
| NF680_RS22200 (NF680_22200) | pilA/pilAI | 4981296..4981718 (-) | 423 | WP_252876912.1 | pilin | Machinery gene |
| NF680_RS22205 (NF680_22205) | pilB | 4981945..4983645 (+) | 1701 | WP_056790439.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| NF680_RS22210 (NF680_22210) | pilC | 4983648..4984865 (+) | 1218 | WP_252876913.1 | type II secretion system F family protein | Machinery gene |
| NF680_RS22215 (NF680_22215) | pilD | 4984867..4985739 (+) | 873 | WP_252876914.1 | A24 family peptidase | Machinery gene |
| NF680_RS22220 (NF680_22220) | coaE | 4985736..4986359 (+) | 624 | WP_252876915.1 | dephospho-CoA kinase | - |
| NF680_RS22225 (NF680_22225) | yacG | 4986356..4986556 (+) | 201 | WP_016773149.1 | DNA gyrase inhibitor YacG | - |
| NF680_RS22230 (NF680_22230) | - | 4986564..4986779 (-) | 216 | WP_016773148.1 | hypothetical protein | - |
| NF680_RS22235 (NF680_22235) | - | 4986845..4987534 (-) | 690 | WP_236168695.1 | energy-coupling factor ABC transporter permease | - |
| NF680_RS22240 (NF680_22240) | - | 4987652..4988278 (+) | 627 | WP_007909887.1 | DUF1780 domain-containing protein | - |
| NF680_RS22245 (NF680_22245) | - | 4988275..4988802 (+) | 528 | WP_252876916.1 | MOSC domain-containing protein | - |
| NF680_RS22250 (NF680_22250) | - | 4988854..4989027 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| NF680_RS22255 (NF680_22255) | - | 4989094..4990392 (+) | 1299 | WP_016773144.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31919.18 Da Isoelectric Point: 7.9881
>NTDB_id=701024 NF680_RS22215 WP_252876914.1 4984867..4985739(+) (pilD) [Pseudomonas siliginis strain OTU6MONTID1]
MPIEELFAVYPRAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLLLRGRCSACSAPISKRYPLTELACGLLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQATSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
MPIEELFAVYPRAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLLLRGRCSACSAPISKRYPLTELACGLLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQATSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=701024 NF680_RS22215 WP_252876914.1 4984867..4985739(+) (pilD) [Pseudomonas siliginis strain OTU6MONTID1]
ATGCCTATCGAAGAACTGTTTGCTGTGTATCCGCGGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAATGTTGTGGTCTGGCGCTTGCCGAAAATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCTACTGAAACGCCTGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGCTGCTGCGCGGGCGCTGCTCGGCCTGTTCGGCGCCGATCAGTAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCCTGCTGTCGGCATTCATCGCCTGGCATCTGGGCTTCGGCTGGCCGGCCGGCT
TGCTGATTTTGCTGACGTGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGCTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCATTGTGGGGCGCAGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGCATCGGTCATGGCGATT
TCAAGCTGTTGGCCTTGCTTGGCGCTTGGGGTGGCTGGCAGATTCTGCCGCTGACAATTCTGTTGTCATCCTTGGTGGGA
GCGATTTTGGGCGTCGTCATGCTGCGTCTGCGCGCCCAGGCAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
ATGCCTATCGAAGAACTGTTTGCTGTGTATCCGCGGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAATGTTGTGGTCTGGCGCTTGCCGAAAATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCTACTGAAACGCCTGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGCTGCTGCGCGGGCGCTGCTCGGCCTGTTCGGCGCCGATCAGTAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCCTGCTGTCGGCATTCATCGCCTGGCATCTGGGCTTCGGCTGGCCGGCCGGCT
TGCTGATTTTGCTGACGTGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGCTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCATTGTGGGGCGCAGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGCATCGGTCATGGCGATT
TCAAGCTGTTGGCCTTGCTTGGCGCTTGGGGTGGCTGGCAGATTCTGCCGCTGACAATTCTGTTGTCATCCTTGGTGGGA
GCGATTTTGGGCGTCGTCATGCTGCGTCTGCGCGCCCAGGCAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.225 |
97.931 |
0.531 |
| pilD | Vibrio campbellii strain DS40M4 |
52.982 |
98.276 |
0.521 |
| pilD | Acinetobacter baumannii D1279779 |
46.479 |
97.931 |
0.455 |
| pilD | Acinetobacter nosocomialis M2 |
46.479 |
97.931 |
0.455 |
| pilD | Neisseria gonorrhoeae MS11 |
48.162 |
93.793 |
0.452 |